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NC_054955.1__YP_010078187.1__KMC43_gp63__00063

Bact-Vir

NC_054955.1__YP_010078187.1__KMC43_gp63__00063

Identity

Accession:
NC_054955 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rahariannevirus› Ralstonia_phage_Raharianne

TaxID: 2759715

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-65
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 46.0 3.81e-01 84.5% 80.6%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 3.70e-01 86.2% 62.6%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 46.0 4.03e-01 86.2% 81.3%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 39.0 3.28e-01 70.7% 65.8%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 48.0 3.93e-01 100.0% 51.2%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 39.0 3.55e-01 70.7% 63.3%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.34e-01 96.6% 75.4%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.66e-01 86.2% 72.2%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 45.0 3.17e-01 100.0% 42.0%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.29e-01 86.2% 58.2%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.55 41.0 3.10e-01 84.5% 57.8%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.51e-01 86.2% 83.8%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 3.81e-01 94.8% 68.0%
2vbuA01 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 46.0 3.59e-01 100.0% 95.4%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.33e-01 84.5% 66.1%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.11e-01 100.0% 78.1%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 36.0 3.09e-01 74.1% 100.0%
1wb1A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 42.0 3.47e-01 94.8% 66.7%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.52e-01 84.5% 81.4%
1l1dA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.52 41.0 3.21e-01 94.8% 77.1%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.51 37.0 3.31e-01 81.0% 95.6%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.50 43.0 3.74e-01 100.0% 92.6%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4295861 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.64 49.0 5.04e-01 100.0% 90.9%
4541291 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.63 52.0 3.63e-01 100.0% 41.3%
2994196 4.10.1.0 ↗ beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.63 47.0 4.47e-01 82.8% 89.9%
3510425 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.62 49.0 3.58e-01 86.2% 59.4%
4000646 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 48.0 3.76e-01 86.2% 73.6%
4027577 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 3.73e-01 86.2% 73.6%
3940063 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 47.0 4.03e-01 86.2% 75.8%
224033 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.59 48.0 4.01e-01 100.0% 55.2%
3797707 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.45e-01 84.5% 52.6%
3662509 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.58 45.0 3.80e-01 93.1% 60.9%
3927945 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.64e-01 86.2% 60.0%
3482289 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.48e-01 84.5% 80.8%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.09e-01 91.4% 68.2%
3226939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.72e-01 84.5% 72.0%
3525358 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.58 45.0 3.58e-01 86.2% 61.7%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 3.31e-01 98.3% 33.8%
3353828 4.1.1.321 ↗ beta barrels › SH3 › SH3 › SH3 › PF26734 0.57 47.0 3.86e-01 93.1% 63.6%
3214168 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 3.50e-01 86.2% 63.2%
3486733 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.57 44.0 3.69e-01 84.5% 73.5%
3711635 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.44e-01 86.2% 65.8%
3250883 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.54e-01 84.5% 76.2%
3979087 4100.1.1.7 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › PF27115 0.55 44.0 4.17e-01 91.4% 95.7%
3804711 219.1.1.113 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28979 0.55 45.0 3.06e-01 100.0% 57.6%
4027712 220.1.1.287 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26279 0.54 40.0 3.25e-01 82.8% 78.3%
3729551 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.54 45.0 3.65e-01 94.8% 76.5%
3557698 220.1.1.122 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › C2_SHIP1-2_first 0.54 41.0 3.48e-01 84.5% 76.0%
4519252 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.53 46.0 3.74e-01 100.0% 71.3%
3180074 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.53 45.0 3.85e-01 94.8% 78.9%
3913573 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.53 41.0 3.26e-01 84.5% 70.8%
3598857 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.53 44.0 3.55e-01 94.8% 70.8%
3578245 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.53 44.0 3.55e-01 94.8% 70.8%
4945827 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.53 44.0 3.86e-01 94.8% 73.3%
5023947 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.53 43.0 3.13e-01 93.1% 84.1%
4117582 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.52 45.0 3.60e-01 100.0% 71.2%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.52 40.0 4.14e-01 89.7% 92.7%
5063794 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.52 44.0 4.00e-01 94.8% 70.0%
3611221 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.52 40.0 3.34e-01 86.2% 80.0%