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NC_054961.1__YP_010078556.1__KMC49_gp17__00017

Bact-Vir

NC_054961.1__YP_010078556.1__KMC49_gp17__00017

Identity

Accession:
NC_054961 ↗
Kingdom:
phage

Quality

76.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Firingavirus› Ralstonia_phage_Firinga

TaxID: 2759725

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-69
PDB
Domain cluster: rep: MT813197.1__QOC59567.1__X__00049__D16-71
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ephA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 39.0 4.18e-01 88.9% 81.5%
4fb5A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 42.0 2.87e-01 84.1% 86.0%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.53 39.0 4.22e-01 79.4% 98.1%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.53 42.0 3.60e-01 85.7% 97.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 38.0 3.39e-01 77.8% 100.0%
1v8wA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 38.0 3.07e-01 87.3% 85.1%
4mamA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 33.0 3.06e-01 74.6% 49.4%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.51 40.0 3.45e-01 92.1% 72.6%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3791081 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.79 39.0 2.98e-01 100.0% 22.1%
5000817 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.65 46.0 3.86e-01 74.6% 85.7%
5014095 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 45.0 4.66e-01 79.4% 81.7%
3405253 74.1.1.0 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.61 45.0 4.24e-01 77.8% 97.3%
3406669 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 36.0 3.04e-01 84.1% 38.0%
None — 0.59 40.0 3.43e-01 98.4% 46.3%
3924803 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.57 46.0 3.95e-01 93.7% 91.8%
3595629 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 49.0 3.98e-01 100.0% 86.7%
3378017 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 42.0 3.30e-01 84.1% 71.1%
3932934 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.54 48.0 4.27e-01 95.2% 90.6%
3650990 274.1.1.44 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 0.53 36.0 2.92e-01 71.4% 60.8%
3285401 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.52 38.0 3.66e-01 79.4% 81.3%
3926012 304.4.1.52 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7153 0.51 38.0 2.87e-01 82.5% 53.9%