←Back to structures
NC_054965.1__YP_010078825.1__KMC53_gp10__00010
Bact-VirNC_054965.1__YP_010078825.1__KMC53_gp10__00010
Identity
- Accession:
- NC_054965 ↗
- Kingdom:
- phage
Quality
93.1
mean pLDDT
Taxonomy
TaxID: 2723758
Cluster
View cluster (18 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-80
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3akoD00 | 6.20.160.10 | Special › Other non-globular › HSP40/DNAj peptide-binding domain › | 0.56 | 32.0 | 3.27e-01 | 70.5% | 57.9% |
| 4fmrA02 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.56 | 34.0 | 3.26e-01 | 74.4% | 53.4% |
| 2p7sA00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.55 | 37.0 | 3.38e-01 | 70.5% | 52.7% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 38.0 | 3.41e-01 | 74.4% | 66.7% |
| 2vpaA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 35.0 | 2.67e-01 | 70.5% | 52.5% |
| 3hvnA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.51 | 27.0 | 3.08e-01 | 97.4% | 67.9% |
| 1s3rA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.51 | 29.0 | 3.35e-01 | 89.7% | 79.2% |
| 1pfoA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.51 | 25.0 | 2.90e-01 | 96.2% | 60.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3717097 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.60 | 44.0 | 2.69e-01 | 78.2% | 92.4% |
| 3358123 | 109.3.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank | 0.55 | 37.0 | 3.18e-01 | 70.5% | 79.2% |
| 3244177 | 11.1.1.934 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N, Arrestin_C | 0.53 | 40.0 | 2.67e-01 | 80.8% | 96.5% |
| 3273636 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.53 | 34.0 | 3.72e-01 | 100.0% | 80.0% |
| 3387999 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.52 | 39.0 | 2.93e-01 | 83.3% | 73.6% |
| 3675745 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.52 | 35.0 | 3.67e-01 | 100.0% | 75.3% |
| 3639466 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.51 | 43.0 | 3.65e-01 | 98.7% | 82.1% |