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NC_054965.1__YP_010078842.1__KMC53_gp27__00027

Bact-Vir

NC_054965.1__YP_010078842.1__KMC53_gp27__00027

Identity

Accession:
NC_054965 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lastavirus› Klebsiella_phage_LASTA

TaxID: 2723758

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-87
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 4.06e-01 89.6% 70.4%
2pqqA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 34.0 2.74e-01 98.7% 31.3%
4mamB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 41.0 3.11e-01 75.3% 50.0%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 40.0 3.09e-01 75.3% 46.8%
1n3hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 3.63e-01 100.0% 60.9%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.55 47.0 3.99e-01 100.0% 99.3%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 50.0 3.91e-01 100.0% 58.9%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.55 44.0 4.67e-01 100.0% 98.5%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 46.0 3.91e-01 100.0% 57.5%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.64e-01 88.3% 74.6%
5akpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 49.0 4.11e-01 100.0% 72.1%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 3.73e-01 85.7% 78.6%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.54 44.0 4.36e-01 100.0% 83.1%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.46e-01 89.6% 66.0%
3cswC01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 46.0 4.22e-01 100.0% 98.1%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 45.0 3.82e-01 100.0% 57.9%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 38.0 2.71e-01 79.2% 77.3%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.52 45.0 3.87e-01 100.0% 95.4%
2z69B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 32.0 2.59e-01 100.0% 32.0%
3fg8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 47.0 4.20e-01 100.0% 87.7%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 32.0 2.72e-01 100.0% 37.2%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.51 40.0 3.52e-01 100.0% 56.9%
2zcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 30.0 2.70e-01 98.7% 41.1%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 43.0 3.41e-01 100.0% 47.7%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 46.0 3.83e-01 100.0% 64.3%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3703777 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 58.0 4.81e-01 100.0% 87.9%
3611176 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 39.0 2.74e-01 100.0% 20.4%
3497158 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.58 35.0 2.61e-01 100.0% 25.4%
5022903 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 52.0 4.52e-01 98.7% 99.1%
4438667 304.42.1.0 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC 0.56 39.0 3.53e-01 100.0% 52.4%
4009159 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.56 34.0 2.82e-01 98.7% 35.4%
3952473 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.56 33.0 3.12e-01 98.7% 48.4%
4034279 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 37.0 3.57e-01 100.0% 60.0%
3201503 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 51.0 5.06e-01 100.0% 98.8%
3507038 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.55 35.0 4.11e-01 97.4% 100.0%
3584409 223.2.1.34 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.55 49.0 3.81e-01 100.0% 53.5%
3238778 223.2.1.42 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Synaptobrevin 0.55 50.0 3.63e-01 100.0% 43.4%
5052185 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 50.0 4.18e-01 100.0% 61.5%
3774464 223.2.1.25 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.55 50.0 3.89e-01 100.0% 68.1%
4999863 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 50.0 3.22e-01 100.0% 30.4%
5050115 223.5.1.0 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.54 49.0 4.77e-01 100.0% 96.5%
3974018 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 44.0 4.60e-01 100.0% 95.7%
4069356 814.1.1.2 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.53 47.0 3.65e-01 100.0% 74.9%
4348908 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.53 45.0 3.11e-01 100.0% 63.9%
3789520 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.53 48.0 3.97e-01 100.0% 61.5%
4943663 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 48.0 3.79e-01 100.0% 53.5%
4021156 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 47.0 3.65e-01 100.0% 55.2%
3722982 223.2.1.29 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.52 47.0 3.89e-01 100.0% 63.0%
5075723 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 47.0 4.03e-01 100.0% 65.8%
170035 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 47.0 4.34e-01 100.0% 95.9%
1281 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.51 32.0 2.72e-01 100.0% 37.2%
4026734 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.51 39.0 2.77e-01 83.1% 49.0%
3724891 223.2.1.28 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Afi1 0.51 46.0 3.56e-01 100.0% 51.8%
3252114 223.2.1.56 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Afi1, DENND11 0.51 46.0 3.54e-01 100.0% 52.9%
4946790 223.1.1.122 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA 0.51 46.0 3.59e-01 100.0% 56.4%
4059795 331.3.1.8 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.51 41.0 3.57e-01 87.0% 81.7%
4945274 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 45.0 3.81e-01 100.0% 60.8%
3606053 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 39.0 3.42e-01 88.3% 95.3%