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NC_054965.1__YP_010078853.1__KMC53_gp38__00038

Bact-Vir

NC_054965.1__YP_010078853.1__KMC53_gp38__00038

Identity

Accession:
NC_054965 ↗
Kingdom:
phage

Quality

65.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lastavirus› Klebsiella_phage_LASTA

TaxID: 2723758

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 112-166
PDB
Domain cluster: rep: OQ547903.1__WFD61275.1__X__00068__D9-64
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04448.18 best DUF551 30.3 8.90e-07 100.0% 88.2%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.37e-01 92.7% 90.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 5.37e-01 85.5% 100.0%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.65 54.0 4.33e-01 100.0% 45.4%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.82e-01 92.7% 85.7%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.61 49.0 4.03e-01 100.0% 46.0%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 49.0 3.59e-01 100.0% 56.7%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.58 32.0 3.36e-01 80.0% 54.0%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 48.0 4.17e-01 96.4% 69.0%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 41.0 3.38e-01 76.4% 48.5%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.54 37.0 3.45e-01 72.7% 81.9%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 43.0 3.56e-01 100.0% 49.6%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 42.0 3.33e-01 100.0% 48.6%
2yvlA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 40.0 3.95e-01 90.9% 98.3%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.36e-01 87.3% 95.8%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.51 40.0 3.22e-01 96.4% 81.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.70 60.0 5.00e-01 100.0% 65.0%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.53e-01 90.9% 94.5%
3976283 1.1.13.32 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF1480 0.64 43.0 3.87e-01 70.9% 98.7%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.63 52.0 4.90e-01 96.4% 81.4%
2561577 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.61 48.0 4.72e-01 89.1% 80.3%
1489617 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.55 43.0 3.41e-01 90.9% 44.6%
1832368 101.15.1.4 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.55 40.0 2.83e-01 80.0% 24.4%
5078307 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.54 45.0 4.17e-01 100.0% 98.7%
3229459 10.1.1.92 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26430 0.52 45.0 3.16e-01 100.0% 60.5%
5063005 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.52 40.0 3.43e-01 100.0% 52.5%
D2 high residues 189-228
PDB
D3 medium residues 5-98
PDB