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NC_054969.1__YP_010079147.1__KMC57_gp17__00017

Bact-Vir

NC_054969.1__YP_010079147.1__KMC57_gp17__00017

Identity

Accession:
NC_054969 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Dongdastvirus› Achromobacter_phage_vB_AxyP_19-32_Axy24

TaxID: 2591048

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 40-95
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 46.0 3.37e-01 80.4% 99.4%
4xabA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.57 42.0 2.85e-01 83.9% 82.0%
7bwfA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.57 41.0 3.73e-01 83.9% 75.9%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.57 42.0 2.88e-01 85.7% 67.8%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 38.0 3.22e-01 73.2% 44.0%
3njzA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 45.0 2.85e-01 98.2% 35.9%
1uwvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.50e-01 73.2% 67.1%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.54 42.0 2.94e-01 87.5% 35.7%
3ctzA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.53 44.0 3.35e-01 100.0% 81.7%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 38.0 3.62e-01 80.4% 81.7%
1rjhA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 43.0 3.51e-01 98.2% 72.9%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.65e-01 80.4% 100.0%
6lsaC01 2.70.230.10 Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › 0.51 41.0 2.84e-01 92.9% 36.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941003 329.1.1.2 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 0.60 41.0 3.33e-01 71.4% 49.1%
3731757 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.59 40.0 4.34e-01 78.6% 88.9%
3262965 376.1.4.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.58 39.0 3.77e-01 76.8% 60.9%
3724438 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.57 38.0 3.72e-01 83.9% 60.0%
4992030 632.1.1.40 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DUF3536 0.56 41.0 2.82e-01 83.9% 21.5%
141372 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.55 38.0 3.20e-01 73.2% 44.0%
3475612 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 45.0 3.33e-01 100.0% 57.5%
5055612 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.53 39.0 2.64e-01 80.4% 40.5%
3879372 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.53 38.0 3.49e-01 89.3% 57.3%
3932457 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.53 45.0 2.91e-01 100.0% 31.0%
119396 375.9.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger in leader protease Nsp1alpha › Zinc finger in leader protease Nsp1alpha › Zf-Nsp1alpha 0.52 39.0 4.03e-01 92.9% 84.6%
3556708 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.52 36.0 3.42e-01 76.8% 58.7%
4031431 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 38.0 3.69e-01 80.4% 81.5%
4567535 1203.1.2.0 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 0.51 36.0 2.29e-01 75.0% 20.4%
4634499 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.51 35.0 3.42e-01 71.4% 68.3%
3416069 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.50 33.0 3.15e-01 76.8% 54.3%
3207082 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.50 37.0 3.73e-01 82.1% 85.5%