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NC_054969.1__YP_010079153.1__KMC57_gp23__00023

Bact-Vir

NC_054969.1__YP_010079153.1__KMC57_gp23__00023

Identity

Accession:
NC_054969 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Dongdastvirus› Achromobacter_phage_vB_AxyP_19-32_Axy24

TaxID: 2591048

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-77
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qv2A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 45.0 3.34e-01 70.3% 46.0%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 45.0 2.99e-01 71.6% 34.8%
4ft4A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 42.0 2.72e-01 71.6% 25.8%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 41.0 2.72e-01 70.3% 61.2%
2c7rA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 42.0 3.09e-01 74.3% 43.1%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.60 41.0 3.87e-01 71.6% 63.3%
4atnA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 39.0 2.91e-01 70.3% 28.0%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.57 39.0 3.41e-01 70.3% 48.7%
1rjjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 3.18e-01 70.3% 45.0%
3ld2B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 37.0 2.94e-01 70.3% 46.3%
4m5dA05 3.30.70.3030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 36.0 3.06e-01 71.6% 53.4%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 35.0 2.52e-01 70.3% 32.5%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.51 36.0 2.63e-01 77.0% 39.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4405647 304.61.1.2 ↗ a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like 0.65 45.0 3.33e-01 73.0% 62.0%
4255094 304.28.1.35 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Amnionless 0.62 40.0 3.51e-01 71.6% 43.6%
3521157 375.4.1.10 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › Amnionless 0.62 42.0 3.20e-01 71.6% 30.0%
327528 328.1.1.2 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › SpoVS 0.60 41.0 3.87e-01 71.6% 63.3%
3664880 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.60 40.0 3.29e-01 70.3% 39.6%
3931669 304.4.1.54 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.59 41.0 3.29e-01 73.0% 74.7%
3665162 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.59 41.0 3.35e-01 71.6% 42.3%
4028284 327.11.2.11 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 0.56 38.0 3.18e-01 70.3% 41.5%
3932435 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 38.0 2.45e-01 70.3% 41.8%
4898997 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.56 38.0 3.88e-01 70.3% 75.0%
3845036 5001.1.1.3 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.56 38.0 2.56e-01 70.3% 39.8%
3474593 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 36.0 2.83e-01 71.6% 31.2%
3893078 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.53 40.0 2.83e-01 79.7% 50.2%
4899007 3121.1.1.0 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.53 38.0 3.87e-01 75.7% 76.4%
2389463 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.53 37.0 2.90e-01 77.0% 74.6%
5052927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.02e-01 75.7% 74.8%
3464534 101.1.2.641 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.51 39.0 2.43e-01 87.8% 34.4%
5035937 327.1.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Alpha-lytic protease prodomain › Alpha-lytic protease prodomain 0.50 35.0 3.52e-01 73.0% 97.3%
4002249 2007.1.4.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat 0.50 35.0 2.63e-01 73.0% 28.4%