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NC_054972.1__YP_010079384.1__KMC60_gp13__00013

Bact-Vir

NC_054972.1__YP_010079384.1__KMC60_gp13__00013

Identity

Accession:
NC_054972 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Pourcelvirus› Achromobacter_phage_vB_AxyP_19-32_Axy11

TaxID: 2591042

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-66
PDB
Domain cluster: rep: OR420748.1__WMM95576.1__CRP143_gp11__00011__D2-55
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 62.0 5.46e-01 91.1% 98.8%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 59.0 4.91e-01 92.9% 94.9%
1cidA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 49.0 4.56e-01 89.3% 57.7%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 49.0 3.93e-01 85.7% 38.5%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 48.0 4.02e-01 87.5% 43.4%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 45.0 4.08e-01 87.5% 51.3%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 46.0 3.95e-01 85.7% 45.6%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 47.0 3.72e-01 85.7% 36.5%
1b04A02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.65 51.0 4.27e-01 87.5% 54.5%
3hqiA01 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.63 54.0 4.15e-01 100.0% 97.8%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 55.0 4.36e-01 100.0% 57.4%
2cqhA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 46.0 3.96e-01 82.1% 82.8%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 50.0 4.35e-01 96.4% 58.5%
1darA05 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 46.0 4.13e-01 87.5% 86.2%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 46.0 3.97e-01 94.6% 51.6%
5hnoA00 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.59 50.0 3.65e-01 98.2% 37.8%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.10e-01 96.4% 61.8%
2a74A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.59 47.0 3.93e-01 91.1% 52.5%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 3.45e-01 91.1% 38.0%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.58 49.0 3.78e-01 100.0% 69.3%
1hx6B01 2.70.9.30 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 0.58 43.0 2.91e-01 82.1% 42.9%
3jxvA02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 43.0 3.45e-01 82.1% 68.6%
3v67A01 3.30.450.210 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain 0.57 38.0 3.09e-01 71.4% 79.3%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 41.0 3.19e-01 76.8% 83.0%
2pn5A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.57 45.0 3.80e-01 91.1% 51.5%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 44.0 4.08e-01 85.7% 68.1%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 3.66e-01 92.9% 47.1%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.84e-01 94.6% 53.1%
2p3yA03 2.60.40.1610 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF1254 0.56 43.0 3.27e-01 85.7% 43.2%
5jtwA02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 44.0 3.76e-01 91.1% 51.0%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.56 46.0 3.50e-01 96.4% 44.2%
3b7yA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 46.0 3.52e-01 96.4% 38.9%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.56 46.0 3.52e-01 92.9% 85.7%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.78e-01 94.6% 55.2%
4dt4A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 41.0 3.72e-01 80.4% 88.6%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 42.0 3.67e-01 87.5% 83.3%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.57e-01 91.1% 48.5%
3fsyB01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 46.0 3.84e-01 100.0% 66.7%
3zssA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.76e-01 98.2% 52.2%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 39.0 3.55e-01 85.7% 53.0%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.71e-01 98.2% 60.4%
2vzsA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.58e-01 96.4% 48.0%
2p9rA00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 43.0 3.63e-01 91.1% 51.0%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.54 42.0 3.33e-01 100.0% 35.8%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 2.75e-01 91.1% 36.7%
4ypjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.56e-01 96.4% 55.5%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.66e-01 94.6% 58.7%
3isyA00 2.60.40.2360 Mainly Beta › Sandwich › Immunoglobulin-like › Intracellular proteinase inhibitor BsuPI 0.53 44.0 3.53e-01 94.6% 56.4%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 47.0 3.60e-01 94.6% 79.8%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.53 41.0 3.96e-01 91.1% 77.3%
3webA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.41e-01 98.2% 53.8%
2r5oA01 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.52 43.0 3.32e-01 100.0% 48.3%
3hwjA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.52 38.0 2.99e-01 85.7% 79.9%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.52 39.0 3.31e-01 89.3% 64.5%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.16e-01 89.3% 77.7%
2wb7A02 2.60.40.2050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.21e-01 96.4% 58.1%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 38.0 2.99e-01 87.5% 96.5%
4c91A04 2.60.120.1620 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 2.98e-01 98.2% 37.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3483496 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.74 56.0 6.12e-01 94.6% 100.0%
3277696 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 54.0 4.97e-01 89.3% 65.8%
3952771 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 59.0 4.73e-01 94.6% 68.6%
5081326 11.1.1.608 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.66 48.0 4.64e-01 89.3% 67.7%
3950412 11.1.4.130 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF1416 0.66 46.0 4.22e-01 85.7% 54.7%
3284181 11.1.1.691 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1416 0.66 46.0 3.96e-01 85.7% 45.6%
3923897 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.66 55.0 3.84e-01 96.4% 28.9%
5054896 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 47.0 3.92e-01 87.5% 43.0%
4319035 11.1.1.608 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.64 45.0 4.23e-01 85.7% 60.9%
4983601 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 46.0 3.95e-01 87.5% 47.8%
5001286 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 46.0 3.89e-01 91.1% 46.3%
5036137 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.62 42.0 3.78e-01 83.9% 48.8%
4952123 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.62 48.0 4.76e-01 87.5% 85.0%
5080825 11.1.1.608 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.62 47.0 4.31e-01 89.3% 62.7%
2988168 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.61 51.0 3.77e-01 100.0% 84.8%
3551231 221.1.1.87 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.61 49.0 4.08e-01 96.4% 49.5%
5034926 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 45.0 4.01e-01 89.3% 54.1%
3216253 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.61 49.0 3.83e-01 92.9% 46.9%
3897640 304.9.1.18 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Tap-RNA_bind 0.60 48.0 4.19e-01 91.1% 92.2%
4381116 11.1.1.154 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S 0.60 50.0 3.51e-01 96.4% 72.1%
5014007 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.60 46.0 4.66e-01 87.5% 92.7%
4568752 10.32.1.19 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.60 44.0 3.57e-01 89.3% 40.9%
5014927 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.60 44.0 3.57e-01 89.3% 40.9%
4509186 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.59 51.0 3.65e-01 100.0% 37.6%
5081704 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 45.0 3.03e-01 89.3% 20.4%
3251743 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.58 45.0 4.14e-01 92.9% 100.0%
4032618 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.58 43.0 4.41e-01 83.9% 96.4%
4427418 11.1.1.1229 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27268 0.58 47.0 4.09e-01 96.4% 81.1%
5026423 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 41.0 3.48e-01 91.1% 42.9%
4433786 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.57 43.0 3.93e-01 89.3% 92.9%
3847724 11.1.1.463 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_C17orf99 0.57 48.0 4.03e-01 98.2% 81.0%
1162929 11.1.1.21 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tissue_fac 0.56 44.0 4.12e-01 96.4% 68.4%
5052958 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 43.0 3.88e-01 85.7% 61.3%
1309233 3145.1.1.1 ↗ beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C 0.56 46.0 3.42e-01 92.9% 77.0%
4971064 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 45.0 3.75e-01 92.9% 49.5%
166590 11.1.1.184 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.56 47.0 3.46e-01 100.0% 43.1%
4333360 3610.1.1.1 ↗ a+b complex topology › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › THDPS_M 0.56 47.0 3.54e-01 100.0% 51.3%
5047113 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 44.0 3.58e-01 91.1% 44.3%
1003912 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.56 42.0 3.67e-01 87.5% 83.3%
4977431 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.55 43.0 4.17e-01 89.3% 86.2%
5038686 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.55 42.0 3.40e-01 85.7% 73.9%
5033249 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 45.0 3.52e-01 94.6% 46.2%
5040751 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 41.0 3.40e-01 83.9% 74.5%
4442170 11.1.1.154 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S 0.55 44.0 3.10e-01 98.2% 26.7%
3565806 11.1.1.45 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.55 45.0 3.62e-01 94.6% 50.4%
3964903 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.54 49.0 4.39e-01 98.2% 78.7%
5071851 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 42.0 3.61e-01 92.9% 72.0%
3601276 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.53 43.0 2.79e-01 89.3% 19.6%
3244998 3223.1.1.0 ↗ beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 0.52 42.0 3.65e-01 98.2% 89.9%
3797738 3570.1.1.1 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.52 43.0 3.21e-01 94.6% 77.8%
3553704 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.52 39.0 3.51e-01 89.3% 94.4%
3591587 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.15e-01 89.3% 40.9%
3433491 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.50 39.0 3.31e-01 92.9% 78.2%