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NC_054985.1__YP_010080233.1__KMC73_gp12__00012

Bact-Vir

NC_054985.1__YP_010080233.1__KMC73_gp12__00012

Identity

Accession:
NC_054985 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-110
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dj8A00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.53 36.0 3.88e-01 70.4% 86.1%
4mdvB03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.53 30.0 3.10e-01 95.9% 58.2%
3vovA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 38.0 3.39e-01 79.6% 86.4%
1ic8A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 35.0 3.81e-01 94.9% 91.9%
4b7hA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.51 35.0 3.36e-01 71.4% 96.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965726 6050.1.1.0 a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.77 62.0 6.63e-01 100.0% 98.8%
3589744 3073.1.1.0 alpha arrays › ORF12 from Lactococcus lactis phage p2 › ORF12 from Lactococcus lactis phage p2 › ORF12 from Lactococcus lactis phage p2 0.65 56.0 5.75e-01 99.0% 100.0%
3587382 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.53 27.0 3.34e-01 91.8% 81.8%
3273126 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.51 44.0 3.65e-01 100.0% 75.8%
3261121 3621.1.1.0 alpha arrays › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain 0.51 36.0 3.55e-01 75.5% 100.0%
D2 high residues 134-192
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vaaA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.07e-01 88.1% 65.3%
2l4bA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.50 36.0 3.26e-01 79.7% 65.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3739375 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.52 43.0 3.54e-01 100.0% 77.6%