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NC_054986.1__YP_010080303.1__KMC74_gp10__00010
Bact-VirNC_054986.1__YP_010080303.1__KMC74_gp10__00010
Identity
- Accession:
- NC_054986 ↗
- Kingdom:
- phage
Quality
57.0
mean pLDDT
Taxonomy
TaxID: 1897539
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 339-391
D2
medium
residues 81-164_295-338
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA02 | 3.40.140.120 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › | 0.71 | 64.0 | 6.43e-01 | 95.3% | 100.0% |
| 4do8A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.52 | 27.0 | 3.44e-01 | 74.2% | 92.4% |
| 3qvnA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.51 | 38.0 | 3.94e-01 | 78.1% | 92.3% |
| 1e8cA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.51 | 44.0 | 3.58e-01 | 93.8% | 93.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3628335 | 3986.1.1.1 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › GTP-binding protein lepA C-terminal domain › GTP-binding protein lepA C-terminal domain › LepA_C | 0.63 | 29.0 | 3.01e-01 | 93.8% | 45.0% |
| 3589399 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.62 | 58.0 | 4.42e-01 | 100.0% | 82.9% |
| 4031453 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.58 | 54.0 | 4.24e-01 | 100.0% | 83.1% |
| 3700599 | 3945.1.1.1 ↗ | alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › DHC_N1 | 0.57 | 43.0 | 2.82e-01 | 78.9% | 20.9% |
D3
medium
residues 165-184_251-294