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NC_054987.1__YP_010080347.1__KMC75_gp14__00014

Bact-Vir

NC_054987.1__YP_010080347.1__KMC75_gp14__00014

Identity

Accession:
NC_054987 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-89
PDB
Domain cluster: representative
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.78 53.0 6.23e-01 96.6% 98.4%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 51.0 5.71e-01 98.9% 94.2%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 49.0 5.56e-01 98.9% 98.5%
2dyiA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.69 45.0 4.66e-01 86.4% 70.2%
6ku8A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 49.0 5.41e-01 98.9% 94.2%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 63.0 5.10e-01 100.0% 75.6%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.67 46.0 4.45e-01 84.1% 63.3%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.67 63.0 5.67e-01 100.0% 93.9%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 61.0 5.00e-01 100.0% 75.5%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 60.0 4.88e-01 100.0% 75.8%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 60.0 4.96e-01 100.0% 76.3%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 60.0 4.94e-01 100.0% 76.8%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 60.0 4.62e-01 100.0% 65.6%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.65 54.0 5.65e-01 96.6% 100.0%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 52.0 4.10e-01 100.0% 42.2%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 50.0 4.96e-01 100.0% 79.3%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 44.0 4.62e-01 83.0% 78.5%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.64 53.0 4.89e-01 100.0% 71.2%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 58.0 4.86e-01 100.0% 76.5%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 57.0 4.55e-01 100.0% 68.0%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 52.0 5.15e-01 100.0% 84.8%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 58.0 4.57e-01 100.0% 65.4%
1dynA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 43.0 3.94e-01 98.9% 54.0%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 58.0 4.37e-01 100.0% 67.6%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.63 54.0 4.95e-01 100.0% 70.7%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 57.0 5.03e-01 100.0% 69.7%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 52.0 4.96e-01 100.0% 77.5%
1mc0A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 44.0 3.65e-01 72.7% 69.6%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 45.0 4.61e-01 81.8% 79.5%
2zu2A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 53.0 5.09e-01 100.0% 81.6%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 55.0 4.59e-01 100.0% 75.6%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 56.0 4.64e-01 100.0% 75.3%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 55.0 4.51e-01 100.0% 80.0%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 54.0 4.47e-01 100.0% 76.8%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 55.0 4.61e-01 100.0% 74.2%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 53.0 4.60e-01 100.0% 87.3%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 53.0 4.84e-01 100.0% 92.4%
2c9aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 4.05e-01 80.7% 64.9%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 53.0 3.63e-01 100.0% 33.1%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 3.79e-01 78.4% 63.9%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 35.0 3.77e-01 100.0% 72.4%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.56 42.0 3.45e-01 78.4% 83.6%
2fgzA01 2.60.40.1130 Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain 0.56 43.0 4.05e-01 86.4% 80.9%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 35.0 3.60e-01 100.0% 66.3%
3i87A02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.55 42.0 4.06e-01 80.7% 77.6%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.55 41.0 3.43e-01 80.7% 86.6%
4ympA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.95e-01 100.0% 67.9%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 3.98e-01 100.0% 66.4%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.54 44.0 4.10e-01 87.5% 80.7%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 34.0 3.20e-01 98.9% 49.5%
3lkmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 48.0 3.96e-01 100.0% 79.6%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 35.0 3.26e-01 97.7% 53.6%
1vx4407 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 33.0 3.59e-01 85.2% 79.7%
2dadA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.52 39.0 3.88e-01 100.0% 75.3%
2kmwA01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.77e-01 80.7% 74.0%
1a6aB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.66e-01 78.4% 68.4%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.98e-01 90.9% 78.0%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 46.0 3.59e-01 100.0% 66.5%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.51 41.0 3.79e-01 87.5% 77.0%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.51 40.0 3.69e-01 90.9% 72.8%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.50 39.0 3.84e-01 86.4% 78.0%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.50 42.0 4.03e-01 100.0% 82.5%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587815 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.81 76.0 7.09e-01 100.0% 95.2%
4034130 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 72.0 6.93e-01 100.0% 97.0%
5023947 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.77 53.0 4.25e-01 100.0% 37.1%
3975275 1.1.13.15 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 0.75 59.0 5.80e-01 100.0% 76.8%
4669352 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 68.0 6.31e-01 100.0% 86.4%
5078808 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 67.0 6.65e-01 100.0% 95.6%
4988096 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 66.0 6.00e-01 100.0% 98.2%
3389361 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 54.0 5.24e-01 85.2% 73.7%
4395103 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 47.0 4.73e-01 85.2% 68.9%
3058418 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.69 62.0 5.89e-01 100.0% 83.3%
4092486 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.68 49.0 3.82e-01 100.0% 36.1%
3788348 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.68 55.0 4.98e-01 85.2% 79.1%
169594 1.1.13.14 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 0.67 63.0 5.67e-01 100.0% 93.9%
185291 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.65 54.0 5.69e-01 97.7% 100.0%
3504737 1.1.13.54 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L 0.65 59.0 5.02e-01 98.9% 95.7%
4983682 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.65 60.0 5.09e-01 100.0% 82.9%
3397694 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.65 53.0 3.84e-01 100.0% 32.8%
3282756 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.65 58.0 5.04e-01 100.0% 87.4%
4214150 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 52.0 4.85e-01 100.0% 70.0%
4487049 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 46.0 3.74e-01 100.0% 38.9%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.63 57.0 5.63e-01 97.7% 95.7%
3741028 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.63 51.0 4.86e-01 89.8% 80.0%
1309427 1.1.5.13 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 0.63 56.0 4.05e-01 100.0% 40.1%
3726341 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.62 56.0 4.15e-01 100.0% 63.6%
4995815 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 57.0 5.03e-01 100.0% 76.8%
3552412 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.62 43.0 4.11e-01 80.7% 63.0%
3393350 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 54.0 4.17e-01 100.0% 45.4%
3256764 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 50.0 4.37e-01 87.5% 73.8%
4965138 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.61 42.0 3.63e-01 70.5% 80.0%
1563850 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.61 55.0 4.51e-01 100.0% 80.0%
3264744 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.61 55.0 4.41e-01 100.0% 78.9%
3685973 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 46.0 4.08e-01 79.5% 56.8%
3965594 1.1.13.53 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_3 0.61 51.0 4.97e-01 89.8% 84.2%
1096951 1.1.5.13 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 0.59 53.0 3.79e-01 100.0% 39.5%
3416144 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.58 51.0 3.91e-01 100.0% 44.3%
3407835 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 50.0 3.66e-01 100.0% 43.2%
4257535 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.57 48.0 4.41e-01 100.0% 71.3%
3971176 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.56 50.0 4.04e-01 100.0% 81.1%
3943691 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.56 49.0 4.82e-01 98.9% 97.9%
4446394 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.56 45.0 3.23e-01 87.5% 35.4%
3371896 11.1.1.122 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.55 41.0 3.79e-01 80.7% 67.2%
4929752 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.55 47.0 3.99e-01 98.9% 81.9%
4615227 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.54 44.0 3.24e-01 88.6% 37.5%
1320672 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.54 44.0 3.19e-01 90.9% 35.0%
3650734 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.54 44.0 3.74e-01 88.6% 64.8%
3347068 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.53 37.0 2.79e-01 73.9% 49.5%
3505373 11.1.3.4 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › CHRD 0.52 46.0 4.05e-01 100.0% 68.0%
4933784 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.52 42.0 3.14e-01 88.6% 37.2%
3608188 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 46.0 3.31e-01 100.0% 82.0%
4236039 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.50 40.0 3.60e-01 90.9% 62.4%