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NC_054988.1__YP_010080372.1__KMC76_gp01__00001
Bact-VirNC_054988.1__YP_010080372.1__KMC76_gp01__00001
Identity
- Accession:
- NC_054988 ↗
- Kingdom:
- phage
Quality
72.8
mean pLDDT
Taxonomy
TaxID: 1897736
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-100
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 33.7 | 4.50e-08 | 51.7% | 95.7% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.75 | 54.0 | 5.58e-01 | 75.9% | 81.9% |
| 1e7lA01 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.74 | 57.0 | 5.92e-01 | 80.5% | 93.8% |
| 1jm7A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 38.0 | 3.60e-01 | 86.2% | 46.6% |
| 3g27A01 | 3.30.50.20 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › prophage-derive protein ybcO | 0.57 | 33.0 | 3.69e-01 | 77.0% | 72.7% |
| 3plwA00 | 3.30.40.190 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.56 | 50.0 | 4.66e-01 | 100.0% | 83.6% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.50 | 42.0 | 3.51e-01 | 95.4% | 51.9% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4937899 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.89 | 61.0 | 6.05e-01 | 71.3% | 67.8% |
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.86 | 61.0 | 7.08e-01 | 73.6% | 100.0% |
| 3588377 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.83 | 65.0 | 6.20e-01 | 81.6% | 81.0% |
| 4932123 | 377.7.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH | 0.83 | 60.0 | 6.64e-01 | 95.4% | 92.9% |
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.82 | 64.0 | 6.93e-01 | 100.0% | 94.7% |
| 5080395 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.82 | 69.0 | 6.14e-01 | 100.0% | 66.1% |
| 5080086 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.82 | 62.0 | 6.50e-01 | 79.3% | 87.5% |
| 5049537 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.80 | 55.0 | 5.41e-01 | 95.4% | 66.0% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.79 | 56.0 | 6.45e-01 | 97.7% | 98.5% |
| 4951302 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.79 | 56.0 | 6.44e-01 | 73.6% | 100.0% |
| 4998487 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.78 | 60.0 | 5.79e-01 | 100.0% | 72.6% |
| 2628026 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.77 | 60.0 | 4.51e-01 | 82.8% | 71.3% |
| 5070853 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 60.0 | 6.13e-01 | 100.0% | 83.5% |
| 4943720 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.76 | 55.0 | 4.87e-01 | 100.0% | 52.8% |
| 4974548 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.76 | 64.0 | 6.82e-01 | 93.1% | 100.0% |
| 5073918 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 64.0 | 6.21e-01 | 100.0% | 82.1% |
| 5039655 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.74 | 63.0 | 6.60e-01 | 100.0% | 98.8% |
| 4999440 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.73 | 59.0 | 6.02e-01 | 100.0% | 87.1% |
| 2485694 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.73 | 62.0 | 5.27e-01 | 100.0% | 58.2% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.73 | 54.0 | 5.21e-01 | 77.0% | 71.1% |
| 3952892 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.72 | 59.0 | 5.13e-01 | 100.0% | 60.0% |
| 3397473 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.72 | 53.0 | 4.78e-01 | 100.0% | 56.7% |
| 5000599 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.72 | 61.0 | 4.69e-01 | 89.7% | 62.8% |
| 5016552 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.71 | 55.0 | 5.06e-01 | 100.0% | 64.5% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.69 | 53.0 | 5.69e-01 | 93.1% | 94.7% |
| 3952384 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.68 | 58.0 | 5.62e-01 | 100.0% | 83.2% |
| 5019258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.67 | 56.0 | 5.80e-01 | 100.0% | 96.2% |
| 3963335 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.67 | 59.0 | 5.15e-01 | 95.4% | 93.8% |
| 3953059 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.67 | 54.0 | 5.40e-01 | 97.7% | 83.3% |
| 8092 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.67 | 38.0 | 3.60e-01 | 86.2% | 46.6% |
| 3952923 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.67 | 56.0 | 5.32e-01 | 100.0% | 78.0% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.66 | 62.0 | 5.56e-01 | 100.0% | 85.2% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.66 | 61.0 | 5.61e-01 | 100.0% | 80.9% |
| 3198748 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.65 | 60.0 | 4.97e-01 | 100.0% | 99.3% |
| 4187709 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.64 | 56.0 | 3.56e-01 | 95.4% | 48.1% |
| 2449258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.64 | 58.0 | 4.65e-01 | 98.9% | 79.3% |
| 8235 | 378.1.1.3 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7 | 0.63 | 57.0 | 5.40e-01 | 100.0% | 82.5% |
| 3249964 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.63 | 53.0 | 5.54e-01 | 97.7% | 100.0% |
| 3964177 | 377.7.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › YbcO | 0.60 | 45.0 | 4.49e-01 | 92.0% | 77.8% |
| 2991844 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.59 | 54.0 | 5.01e-01 | 100.0% | 95.4% |
| 1684075 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.59 | 52.0 | 4.17e-01 | 96.6% | 65.3% |
| 3307439 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.59 | 54.0 | 4.78e-01 | 100.0% | 72.1% |
| 4938133 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.59 | 41.0 | 4.19e-01 | 73.6% | 88.2% |
| 1501533 | 247.1.1.2 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,RMMBL | 0.50 | 40.0 | 2.95e-01 | 89.7% | 92.1% |