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NC_054988.1__YP_010080406.1__KMC76_gp35__00035

Bact-Vir

NC_054988.1__YP_010080406.1__KMC76_gp35__00035

Identity

Accession:
NC_054988 ↗
Kingdom:
phage

Quality

75.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Unaquatrovirus› Leuconostoc_phage_Ln-7

TaxID: 1897736

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-76
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.60 46.0 3.71e-01 84.0% 95.4%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.47e-01 85.3% 90.3%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.56 39.0 4.28e-01 93.3% 96.5%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 34.0 4.00e-01 88.0% 100.0%
3w9iD03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.55 45.0 4.11e-01 92.0% 93.2%
4mt1A03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.55 45.0 4.12e-01 90.7% 95.9%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.77e-01 77.3% 81.4%
2nutB04 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.53 44.0 3.27e-01 100.0% 40.3%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 35.0 3.56e-01 97.3% 68.9%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.52 44.0 3.75e-01 93.3% 93.5%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 33.0 3.74e-01 77.3% 92.6%
6ei1A01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 45.0 3.11e-01 100.0% 42.0%
4ylmX00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.50 38.0 2.70e-01 85.3% 84.7%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 42.0 3.78e-01 88.0% 78.6%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.84e-01 98.7% 86.2%
4995639 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.64 41.0 4.03e-01 89.3% 61.3%
4395103 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 39.0 3.71e-01 100.0% 60.0%
5042797 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.57 39.0 4.26e-01 98.7% 88.3%
3621303 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 3.95e-01 93.3% 62.3%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.29e-01 90.7% 84.4%
3480669 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.54 37.0 3.07e-01 72.0% 100.0%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 4.18e-01 98.7% 95.0%
3789624 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.54 37.0 3.11e-01 73.3% 100.0%
3625038 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.54 37.0 3.11e-01 73.3% 100.0%
4638448 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.53 44.0 3.85e-01 86.7% 79.0%
3389948 4.8.1.29 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SH3_AEBP2_C 0.53 31.0 2.88e-01 74.7% 44.0%
3258439 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 3.38e-01 100.0% 56.8%
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 41.0 4.40e-01 85.3% 98.4%
3839740 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 45.0 3.64e-01 93.3% 97.1%
3719707 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 36.0 2.67e-01 74.7% 60.8%
4209527 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.52 43.0 3.72e-01 86.7% 80.9%
3536187 219.1.1.41 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 0.52 44.0 3.60e-01 93.3% 55.7%
3721350 312.1.1.11 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › Ap4A_phos_N 0.52 38.0 2.99e-01 78.7% 54.3%
3507498 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.52 37.0 3.09e-01 78.7% 100.0%
5029394 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.52 46.0 3.32e-01 100.0% 47.4%
4937424 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.52 28.0 3.27e-01 82.7% 76.0%
4600813 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.52 43.0 3.70e-01 88.0% 79.1%
3682355 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 33.0 3.73e-01 84.0% 89.1%
4110022 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.51 43.0 3.66e-01 89.3% 79.1%
3244230 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.51 36.0 3.00e-01 77.3% 99.3%
3265296 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.33e-01 98.7% 60.0%
4496370 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.51 42.0 3.55e-01 90.7% 73.6%
4318569 219.1.1.41 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 0.50 45.0 2.86e-01 100.0% 29.4%
4289955 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.50 42.0 3.64e-01 90.7% 82.6%
4328622 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.50 42.0 3.63e-01 90.7% 80.0%