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NC_055011.1__YP_010081285.1__KMD00_gp22__00022

Bact-Vir

NC_055011.1__YP_010081285.1__KMD00_gp22__00022

Identity

Accession:
NC_055011 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ceduovirus› Lactococcus_phage_CHPC1020

TaxID: 2675237

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-157
PDB
Domain cluster: rep: NC_048757.1__YP_009844891.1__HWC13_gp082__00082__D5-149
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00959.25 best Phage_lysozyme 96.2 2.60e-27 91.0% 100.0%
D2 high residues 177-234
PDB
Domain cluster: rep: OP172812.1__WAX16713.1__LG75P1_00032__00032__D155-209
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f87B00 3.30.720.190 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.74 59.0 5.83e-01 100.0% 82.3%
3l9aX01 3.30.720.180 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.66 57.0 5.32e-01 100.0% 86.7%
3vtiA06 3.30.420.560 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.61 49.0 4.03e-01 87.9% 52.4%
4ijdA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 26.0 3.35e-01 74.1% 61.3%
6mptA01 3.30.420.590 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 44.0 3.28e-01 91.4% 49.7%
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 40.0 3.79e-01 89.7% 67.6%
7x68A01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.53 40.0 4.27e-01 87.9% 98.0%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 40.0 3.76e-01 87.9% 96.2%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 40.0 3.52e-01 84.5% 80.2%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 43.0 2.86e-01 94.8% 46.9%
2yrmA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 26.0 3.14e-01 74.1% 51.4%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 39.0 3.30e-01 84.5% 74.8%
6xj6A01 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.51 36.0 2.74e-01 77.6% 48.1%
3lnbA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.51 36.0 2.43e-01 77.6% 84.9%
4f03A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 35.0 3.01e-01 75.9% 92.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1031167 3708.1.1.1 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.70 58.0 5.12e-01 100.0% 62.1%
119459 3120.1.1.0 ↗ 0.66 57.0 5.19e-01 100.0% 80.2%
3912151 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.66 47.0 4.54e-01 84.5% 66.2%
3242119 4104.1.1.0 ↗ beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like 0.61 53.0 4.40e-01 100.0% 55.2%
3304945 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.59 37.0 3.50e-01 75.9% 51.4%
3213262 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.59 46.0 3.92e-01 87.9% 59.0%
3951192 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.58 45.0 2.71e-01 89.7% 29.7%
3216660 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 43.0 2.87e-01 86.2% 21.6%
4998319 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.55 45.0 2.84e-01 100.0% 16.9%
4249669 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 44.0 3.76e-01 89.7% 98.9%
4943214 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.54 40.0 3.84e-01 84.5% 67.1%
None — 0.54 45.0 3.56e-01 98.3% 48.1%
5051097 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.54 46.0 4.17e-01 98.3% 75.0%
3959568 3702.1.1.0 ↗ beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain 0.53 37.0 2.47e-01 75.9% 43.0%
1693005 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 45.0 4.00e-01 100.0% 93.3%
3576434 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.55e-01 91.4% 51.4%
4936105 231.1.2.3 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › CbiZ 0.52 35.0 2.55e-01 100.0% 22.7%
4014945 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.52 40.0 3.81e-01 86.2% 91.4%
4025091 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 41.0 3.79e-01 89.7% 97.3%