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NC_055017.1__YP_010081493.1__KMD06_gp11__00011

Bact-Vir

NC_055017.1__YP_010081493.1__KMD06_gp11__00011

Identity

Accession:
NC_055017 ↗
Kingdom:
phage

Quality

73.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ceduovirus› Lactococcus_phage_PC_B1

TaxID: 2675263

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-83
PDB
D2 high residues 88-143
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5g56A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 53.0 4.20e-01 100.0% 99.2%
5ao6A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 52.0 4.47e-01 98.2% 100.0%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 39.0 2.40e-01 98.2% 11.2%
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 44.0 3.48e-01 100.0% 93.7%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 39.0 2.83e-01 85.7% 82.0%
2wzpR03 3.30.1920.20 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Phage tail base-plate attachment protein, domain D3 0.51 40.0 3.63e-01 87.5% 96.2%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 35.0 3.23e-01 100.0% 54.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967108 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.63 38.0 4.35e-01 96.4% 85.0%
4384294 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.59 36.0 4.16e-01 98.2% 87.5%
4269264 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.56 35.0 3.85e-01 98.2% 80.0%
4991198 2.1.1.359 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HupF_HypC 0.56 45.0 3.64e-01 92.9% 88.7%
3958403 2003.1.3.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 0.55 38.0 2.82e-01 98.2% 27.3%
3786288 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.52 41.0 2.97e-01 91.1% 49.7%
3770704 2.1.1.49 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MRP-S35 0.51 34.0 3.34e-01 100.0% 63.3%
5054141 2.14.1.0 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like 0.51 38.0 4.03e-01 100.0% 92.0%
3268480 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 40.0 3.04e-01 100.0% 33.8%