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NC_055023.1__YP_010081842.1__KMD12_gp13__00013

Bact-Vir

NC_055023.1__YP_010081842.1__KMD12_gp13__00013

Identity

Accession:
NC_055023 ↗
Kingdom:
phage

Quality

75.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Coventryvirus› Staphylococcus_phage_SP276

TaxID: 2495555

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-43_94-207
PDB
Domain cluster: rep: IMGVR_UViG_3300022902_001387-3300022902-Ga0233429_10148066__D4-201
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF28530.1 best DUF8426 26.5 7.90e-06 84.1% 63.5%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rcmB00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.72 65.0 6.44e-01 100.0% 90.6%
4rcjA01 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.71 63.0 6.43e-01 99.3% 97.9%
5dnoA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.69 60.0 5.89e-01 96.7% 85.4%
3fn5B00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.62 50.0 4.90e-01 84.8% 89.6%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 40.0 4.32e-01 75.5% 77.8%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 41.0 4.25e-01 76.8% 73.2%
1t62B00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.61 47.0 4.64e-01 81.5% 85.9%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 40.0 4.35e-01 76.8% 81.0%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 40.0 4.51e-01 77.5% 91.5%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 38.0 4.13e-01 76.8% 78.7%
1xneA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.57 41.0 4.67e-01 72.8% 97.3%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 38.0 3.92e-01 94.7% 71.1%
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.56 41.0 4.24e-01 74.2% 95.0%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 37.0 3.98e-01 75.5% 78.8%
3dmbA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.93e-01 76.8% 74.0%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 31.0 3.47e-01 92.1% 72.8%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 37.0 4.04e-01 74.2% 86.3%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 37.0 3.92e-01 93.4% 79.3%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 39.0 4.01e-01 76.2% 83.8%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 31.0 3.67e-01 92.7% 86.0%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 30.0 3.58e-01 92.1% 89.5%
2cr4A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 31.0 3.66e-01 91.4% 89.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004529 1.1.9.50 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.89 64.0 7.34e-01 94.0% 96.5%
5001719 1.1.9.50 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.88 66.0 7.52e-01 94.7% 100.0%
4938797 1.1.9.50 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.82 76.0 7.52e-01 94.7% 98.7%
3979957 1.1.9.50 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.82 73.0 7.36e-01 91.4% 100.0%
5018418 1.1.9.50 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.76 69.0 6.78e-01 94.7% 94.4%
3603513 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 63.0 6.46e-01 94.7% 96.6%
3418278 1.1.9.8 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › YTH 0.71 65.0 6.00e-01 100.0% 79.5%
5047765 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 39.0 4.26e-01 76.8% 82.4%
3385776 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 38.0 4.03e-01 74.8% 74.1%
5032025 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 38.0 4.51e-01 84.1% 99.0%
4015385 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 43.0 3.94e-01 85.4% 63.1%
5021621 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 40.0 4.18e-01 95.4% 83.7%
4960647 3535.1.1.0 ↗ a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 0.54 33.0 3.74e-01 76.8% 79.1%
4958989 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.54 39.0 3.93e-01 75.5% 82.6%
3364575 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 39.0 3.82e-01 76.2% 71.3%
2099294 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 39.0 4.01e-01 76.2% 83.8%
D2 high residues 212-320
PDB