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NC_055023.1__YP_010081850.1__KMD12_gp21__00021
Bact-VirNC_055023.1__YP_010081850.1__KMD12_gp21__00021
Identity
- Accession:
- NC_055023 ↗
- Kingdom:
- phage
Quality
79.0
mean pLDDT
Taxonomy
TaxID: 2495555
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-89
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.78 | 44.0 | 3.89e-01 | 82.4% | 40.6% |
| 2j1dG01 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.74 | 70.0 | 4.22e-01 | 100.0% | 43.9% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.70 | 53.0 | 5.44e-01 | 82.4% | 92.3% |
| 1ohuA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.69 | 48.0 | 3.65e-01 | 73.5% | 80.6% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 61.0 | 5.25e-01 | 97.1% | 71.6% |
| 1s7zA01 | 1.20.120.780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr | 0.60 | 45.0 | 3.89e-01 | 77.9% | 62.4% |
| 1kqfC00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.54 | 45.0 | 3.11e-01 | 89.7% | 28.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3894123 | 148.1.3.56 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Arv1 | 0.85 | 73.0 | 5.15e-01 | 92.6% | 34.2% |
| 3660496 | 604.3.1.19 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF3475 | 0.80 | 70.0 | 4.76e-01 | 94.1% | 64.9% |
| 3326524 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.79 | 72.0 | 4.47e-01 | 100.0% | 19.7% |
| 3235312 | 310.3.1.12 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › LMBR1 | 0.78 | 61.0 | 4.33e-01 | 83.8% | 41.6% |
| 3580238 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.77 | 67.0 | 5.17e-01 | 94.1% | 46.2% |
| 4342809 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.75 | 70.0 | 5.59e-01 | 100.0% | 71.2% |
| 4886107 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.74 | 59.0 | 5.15e-01 | 95.6% | 58.0% |
| 3182290 | 174.1.1.4 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4267 | 0.69 | 54.0 | 4.34e-01 | 83.8% | 45.4% |
| 4019924 | 601.39.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › Enhancer of filamentation 1 › Enhancer of filamentation 1 › DUF7784 | 0.68 | 63.0 | 4.35e-01 | 100.0% | 41.5% |
| 3576309 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.67 | 49.0 | 4.26e-01 | 77.9% | 51.0% |
| 3691569 | 2004.1.1.216 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_4 | 0.65 | 56.0 | 3.69e-01 | 94.1% | 94.0% |
| 3465149 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.64 | 45.0 | 3.76e-01 | 73.5% | 60.0% |
| 3492550 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.63 | 56.0 | 3.53e-01 | 92.6% | 69.1% |
| 3421867 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.61 | 48.0 | 3.30e-01 | 88.2% | 26.9% |
| 5049970 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.60 | 46.0 | 3.42e-01 | 82.4% | 47.2% |
| 3593444 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 40.0 | 2.76e-01 | 73.5% | 21.8% |