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NC_055027.1__YP_010082136.1__KMD16_gp42__00042
Bact-VirNC_055027.1__YP_010082136.1__KMD16_gp42__00042
Identity
- Accession:
- NC_055027 ↗
- Kingdom:
- phage
Quality
73.4
mean pLDDT
Taxonomy
TaxID: 2575255
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-108
Domain cluster:
rep: MK686072.1__QBZ73598.1__SEA_ROSAASANTEWAA_34__00034__D133-210
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 36.0 | 4.23e-01 | 84.1% | 73.0% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.68 | 35.0 | 3.89e-01 | 84.1% | 61.2% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 33.0 | 3.66e-01 | 86.0% | 60.0% |
| 1x60A01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.63 | 33.0 | 4.03e-01 | 81.3% | 77.8% |
| 1utaA00 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.63 | 33.0 | 3.76e-01 | 86.0% | 67.5% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.62 | 38.0 | 4.08e-01 | 83.2% | 70.5% |
| 8gccA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.62 | 35.0 | 3.81e-01 | 84.1% | 67.4% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 38.0 | 4.26e-01 | 88.8% | 80.0% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 32.0 | 3.66e-01 | 85.0% | 67.1% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 32.0 | 3.54e-01 | 84.1% | 63.1% |
| 4hv0C00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.58 | 33.0 | 3.56e-01 | 75.7% | 65.2% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 32.0 | 3.86e-01 | 72.0% | 80.6% |
| 3qx3B03 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.58 | 35.0 | 3.60e-01 | 86.0% | 62.0% |
| 4kqeA03 | 3.30.720.200 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 32.0 | 3.80e-01 | 73.8% | 86.8% |
| 2wviA00 | 1.25.40.430 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 31.0 | 2.69e-01 | 71.0% | 36.3% |
| 2anrA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 31.0 | 3.51e-01 | 85.0% | 76.0% |
| 1g3pA02 | 3.90.450.1 | Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 | 0.54 | 36.0 | 3.69e-01 | 92.5% | 70.2% |
| 4aimA03 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 29.0 | 3.31e-01 | 84.1% | 73.2% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.53 | 29.0 | 3.11e-01 | 87.9% | 59.6% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 31.0 | 3.28e-01 | 72.9% | 65.6% |
| 2hgcA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 29.0 | 3.26e-01 | 86.0% | 73.1% |
| 3imoC00 | 3.30.920.70 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › | 0.50 | 34.0 | 3.45e-01 | 79.4% | 69.2% |
| 4yiiA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 31.0 | 3.79e-01 | 72.0% | 94.4% |
| 1d0xA04 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.50 | 35.0 | 3.22e-01 | 71.0% | 78.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4976823 | 305.2.1.0 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) | 0.70 | 34.0 | 4.01e-01 | 86.0% | 65.3% |
| 3442148 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.67 | 33.0 | 3.83e-01 | 79.4% | 64.0% |
| 4603561 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.64 | 33.0 | 3.82e-01 | 80.4% | 67.5% |
| 3976762 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.64 | 34.0 | 3.97e-01 | 78.5% | 73.3% |
| 3723914 | 327.11.2.40 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF31052 | 0.63 | 29.0 | 3.55e-01 | 74.8% | 66.2% |
| 4931004 | 304.8.1.12 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 | 0.59 | 30.0 | 3.64e-01 | 79.4% | 76.9% |
| 5057765 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.58 | 32.0 | 3.64e-01 | 83.2% | 71.2% |
| 3225058 | 101.1.2.566 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C | 0.54 | 37.0 | 2.64e-01 | 70.1% | 46.8% |
| 3656555 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 34.0 | 3.35e-01 | 78.5% | 58.3% |
| 3946399 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.39e-01 | 98.1% | 56.9% |
| 3531801 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 32.0 | 3.35e-01 | 86.0% | 66.3% |
| 5076521 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.52 | 37.0 | 3.48e-01 | 96.3% | 61.5% |
| 5030237 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 29.0 | 3.24e-01 | 89.7% | 71.2% |
| 3976357 | 101.1.2.270 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF977 | 0.51 | 36.0 | 3.82e-01 | 85.0% | 83.2% |
| 4068860 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.51 | 34.0 | 3.32e-01 | 92.5% | 61.7% |
| 3493263 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 41.0 | 2.94e-01 | 87.9% | 38.1% |