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NC_055028.1__YP_010082252.1__KMD17_gp85__00085

Bact-Vir

NC_055028.1__YP_010082252.1__KMD17_gp85__00085

Identity

Accession:
NC_055028 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Halcyonevirus› Paenibacillus_phage_C7Cdelta

TaxID: 2249773

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-48
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzmH02 3.30.1490.10 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.67 53.0 4.90e-01 87.2% 78.7%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.67 55.0 4.93e-01 100.0% 94.4%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 56.0 4.44e-01 100.0% 75.8%
3v76A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 48.0 4.00e-01 93.6% 80.0%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.34e-01 85.1% 100.0%
2g7zA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 43.0 3.08e-01 85.1% 55.5%
4zbgA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 45.0 3.25e-01 95.7% 62.3%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 45.0 3.83e-01 93.6% 97.6%
1jelP00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.56 45.0 3.89e-01 100.0% 89.4%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 37.0 3.61e-01 74.5% 83.1%
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.55 45.0 3.87e-01 100.0% 93.1%
2p04A00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.54 43.0 3.49e-01 97.9% 80.4%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 2.52e-01 76.6% 72.0%
1zynA00 3.40.30.80 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.53 41.0 2.83e-01 93.6% 41.3%
6k5mA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 37.0 2.76e-01 76.6% 47.8%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 41.0 3.33e-01 100.0% 88.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.78 58.0 5.92e-01 80.9% 88.9%
3232394 109.4.1.264 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3 0.77 56.0 3.39e-01 80.9% 12.4%
3823407 386.1.1.14 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-LYAR 0.77 57.0 5.30e-01 80.9% 66.7%
3227231 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.76 56.0 5.12e-01 80.9% 82.5%
3596086 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 59.0 5.33e-01 87.2% 67.7%
3991259 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.74 50.0 4.69e-01 72.3% 85.0%
3993660 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 50.0 4.21e-01 76.6% 67.1%
3932949 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.70 49.0 4.20e-01 76.6% 63.7%
3701223 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.68 55.0 3.73e-01 93.6% 88.1%
3266105 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.68 46.0 4.32e-01 72.3% 80.0%
3924623 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.68 45.0 4.35e-01 70.2% 85.5%
5017308 4012.1.1.5 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › DUF515 0.67 49.0 4.68e-01 85.1% 80.0%
3223788 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 48.0 3.62e-01 85.1% 77.6%
3957303 304.15.1.0 ↗ a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.63 45.0 3.22e-01 80.9% 81.9%
3193367 109.4.1.140 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20 0.61 38.0 2.31e-01 95.7% 8.8%
5018743 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 46.0 4.05e-01 89.4% 100.0%
5041872 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 45.0 4.03e-01 89.4% 100.0%
4955725 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 3.78e-01 100.0% 80.0%
4990 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.57 46.0 3.98e-01 100.0% 89.3%
3261587 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.57 38.0 3.43e-01 72.3% 61.3%
3945048 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.56 46.0 3.95e-01 100.0% 94.1%
3713490 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.34e-01 89.4% 56.5%
3588312 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.55 45.0 3.81e-01 100.0% 92.0%
4991 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.54 45.0 3.80e-01 100.0% 88.6%