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NC_055031.1__YP_010082468.1__KMD20_gp33__00033
Bact-VirNC_055031.1__YP_010082468.1__KMD20_gp33__00033
Identity
- Accession:
- NC_055031 ↗
- Kingdom:
- phage
Quality
91.4
mean pLDDT
Taxonomy
TaxID: 2282396
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-115
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tmfI00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.66 | 57.0 | 4.57e-01 | 98.0% | 84.1% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.63 | 45.0 | 4.81e-01 | 88.1% | 87.2% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.57 | 46.0 | 4.03e-01 | 84.2% | 79.9% |
| 2gmhA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 48.0 | 3.62e-01 | 94.1% | 90.8% |
| 3o6xA02 | 1.20.120.1560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 36.0 | 3.26e-01 | 70.3% | 85.1% |
| 1cptA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 45.0 | 3.01e-01 | 95.0% | 33.3% |
| 1ynfA00 | 3.75.10.20 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › Succinylarginine dihydrolase | 0.51 | 39.0 | 2.67e-01 | 84.2% | 97.2% |
| 2auaA02 | 1.10.3800.10 | Mainly Alpha › Orthogonal Bundle › ADP-ribosylation fold › ADP-ribosylation domain | 0.51 | 30.0 | 3.13e-01 | 73.3% | 63.7% |
| 1okcA00 | 1.50.40.10 | Mainly Alpha › Alpha/alpha barrel › Mitochondrial carrier fold › Mitochondrial carrier domain | 0.51 | 43.0 | 3.14e-01 | 94.1% | 81.5% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.51 | 41.0 | 3.31e-01 | 88.1% | 47.8% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.51 | 35.0 | 3.70e-01 | 72.3% | 98.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3259748 | 3589.1.1.1 ↗ | a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP | 0.65 | 46.0 | 3.64e-01 | 92.1% | 34.1% |
| None | — | 0.60 | 43.0 | 3.05e-01 | 95.0% | 25.1% | |
| 5047820 | 3896.1.1.2 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › DUF92 | 0.60 | 51.0 | 3.87e-01 | 96.0% | 74.5% |
| 3973579 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.58 | 47.0 | 3.71e-01 | 89.1% | 50.5% |
| 3735227 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.57 | 49.0 | 3.58e-01 | 96.0% | 78.3% |
| 4984088 | 7527.1.1.2 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 | 0.57 | 46.0 | 3.19e-01 | 91.1% | 71.5% |
| 3195432 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 44.0 | 4.66e-01 | 91.1% | 95.6% |
| 4943813 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.56 | 39.0 | 3.64e-01 | 71.3% | 77.6% |
| 4022794 | 2003.1.2.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.56 | 47.0 | 3.45e-01 | 96.0% | 80.3% |
| 3842539 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 45.0 | 4.55e-01 | 91.1% | 100.0% |
| 3480464 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 40.0 | 3.10e-01 | 81.2% | 55.3% |
| 3166842 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.50 | 32.0 | 3.00e-01 | 76.2% | 52.4% |