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NC_055031.1__YP_010082479.1__KMD20_gp44__00044
Bact-VirNC_055031.1__YP_010082479.1__KMD20_gp44__00044
Identity
- Accession:
- NC_055031 ↗
- Kingdom:
- phage
Quality
88.9
mean pLDDT
Taxonomy
TaxID: 2282396
Cluster
View cluster (65 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-124
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x0tA02 | 6.20.50.20 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.65 | 28.0 | 3.88e-01 | 72.5% | 82.2% |
| 1df0A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 31.0 | 3.17e-01 | 91.2% | 46.7% |
| 3mxlA02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.60 | 47.0 | 4.51e-01 | 83.5% | 96.2% |
| 4j8qA02 | 2.60.40.2370 | Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain | 0.55 | 38.0 | 3.50e-01 | 79.1% | 55.1% |
| 2r2aA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 3.37e-01 | 84.6% | 92.6% |
| 1euvA02 | 3.30.310.130 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related | 0.54 | 41.0 | 3.99e-01 | 83.5% | 100.0% |
| 3abgB01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 43.0 | 3.63e-01 | 90.1% | 73.5% |
| 4ls9B02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.53 | 45.0 | 4.11e-01 | 98.9% | 69.9% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.52 | 46.0 | 3.21e-01 | 100.0% | 67.3% |
| 1iftA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.52 | 38.0 | 3.13e-01 | 78.0% | 98.3% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.52 | 34.0 | 3.34e-01 | 97.8% | 59.8% |
| 3ctkA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.52 | 38.0 | 3.15e-01 | 78.0% | 98.2% |
| 1nxzA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.51 | 36.0 | 3.90e-01 | 95.6% | 93.1% |
| 3po3S02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.50 | 27.0 | 2.99e-01 | 98.9% | 62.2% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4420340 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 30.0 | 3.54e-01 | 81.3% | 65.0% |
| 3606532 | 2484.6.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR | 0.58 | 31.0 | 3.13e-01 | 82.4% | 50.0% |
| 4000167 | 2008.6.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains | 0.55 | 47.0 | 3.99e-01 | 96.7% | 76.1% |
| 4026880 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.54 | 47.0 | 3.50e-01 | 97.8% | 61.7% |
| 2392505 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.54 | 44.0 | 3.65e-01 | 90.1% | 71.7% |
| 3600999 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.53 | 47.0 | 3.25e-01 | 100.0% | 74.8% |
| 4527800 | 1033.1.1.3 ↗ | beta duplicates or obligate multimers › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › TcdA_TcdB_pore, PF30720 | 0.53 | 43.0 | 2.51e-01 | 90.1% | 55.2% |
| 5001115 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.53 | 44.0 | 3.23e-01 | 93.4% | 95.8% |
| 4157830 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.53 | 45.0 | 3.17e-01 | 93.4% | 90.6% |
| None | — | 0.52 | 44.0 | 3.15e-01 | 93.4% | 90.6% | |
| 5023029 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.52 | 44.0 | 3.24e-01 | 93.4% | 87.6% |
| 5048036 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.52 | 43.0 | 3.17e-01 | 93.4% | 85.4% |
| 3833842 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.52 | 40.0 | 2.99e-01 | 82.4% | 91.1% |
| 3219023 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.51 | 32.0 | 3.18e-01 | 94.5% | 57.0% |
| 5076447 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.51 | 43.0 | 3.13e-01 | 93.4% | 84.2% |
| 5050491 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.51 | 43.0 | 3.11e-01 | 93.4% | 85.2% |
| 4943282 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 40.0 | 3.22e-01 | 84.6% | 47.2% |
| 5023912 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 40.0 | 3.19e-01 | 84.6% | 45.4% |
| 3693105 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.51 | 38.0 | 2.79e-01 | 80.2% | 88.5% |
| 3243390 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.51 | 43.0 | 3.08e-01 | 93.4% | 82.5% |
| 3657857 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.51 | 43.0 | 3.09e-01 | 93.4% | 83.3% |
| 3597617 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 43.0 | 3.04e-01 | 93.4% | 81.1% |
| 5069531 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.50 | 39.0 | 3.30e-01 | 82.4% | 54.7% |
| 7400 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.50 | 44.0 | 3.34e-01 | 97.8% | 57.5% |
| 5030774 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.50 | 39.0 | 3.10e-01 | 82.4% | 46.1% |
| 4940069 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.50 | 39.0 | 3.32e-01 | 83.5% | 56.0% |