←Back to structures
NC_055031.1__YP_010082483.1__KMD20_gp48__00048
Bact-VirNC_055031.1__YP_010082483.1__KMD20_gp48__00048
Identity
- Accession:
- NC_055031 ↗
- Kingdom:
- phage
Quality
97.6
mean pLDDT
Taxonomy
TaxID: 2282396
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-104
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00244__D2-94
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23969.3 best | DUF7296 | 102.3 | 3.10e-29 | 100.0% | 90.3% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a6qA01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.64 | 29.0 | 4.18e-01 | 84.5% | 100.0% |
| 3hryA01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.64 | 27.0 | 3.71e-01 | 81.6% | 79.6% |
| 4g6vA00 | 3.40.1350.120 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 44.0 | 4.05e-01 | 72.8% | 84.8% |
| 7bwfD01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.58 | 29.0 | 3.93e-01 | 86.4% | 100.0% |
| 6ilsA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 35.0 | 2.60e-01 | 70.9% | 63.1% |
| 6tqfA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 3.41e-01 | 93.2% | 98.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 221595 | 2008.1.1.69 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CdiA_C | 0.62 | 44.0 | 4.05e-01 | 72.8% | 84.8% |
| 4929265 | 2004.1.1.260 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MEDS | 0.54 | 41.0 | 3.43e-01 | 84.5% | 91.5% |
| 3782112 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.53 | 39.0 | 2.69e-01 | 78.6% | 36.1% |
| 5057421 | 225.1.1.7 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 | 0.52 | 45.0 | 3.68e-01 | 100.0% | 85.7% |
| 3643123 | 3676.1.1.0 ↗ | alpha duplicates or obligate multimers › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain | 0.52 | 37.0 | 2.68e-01 | 88.3% | 23.3% |
| 4065598 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.50 | 40.0 | 3.01e-01 | 86.4% | 84.9% |