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NC_055031.1__YP_010082495.1__KMD20_gp60__00060

Bact-Vir

NC_055031.1__YP_010082495.1__KMD20_gp60__00060

Identity

Accession:
NC_055031 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Halcyonevirus› Paenibacillus_phage_Unity

TaxID: 2282396

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-103
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.63 50.0 4.09e-01 83.0% 83.6%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.63 49.0 4.18e-01 83.0% 92.6%
2uytA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 40.0 3.11e-01 73.0% 28.5%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 34.0 3.04e-01 77.0% 38.2%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.61 49.0 4.21e-01 85.0% 68.2%
4gwmB03 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.60 50.0 4.24e-01 90.0% 89.6%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.60 35.0 3.71e-01 80.0% 63.3%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 37.0 3.53e-01 83.0% 53.5%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.59 50.0 4.52e-01 93.0% 89.1%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 43.0 3.85e-01 79.0% 70.4%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 44.0 4.43e-01 82.0% 88.2%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 42.0 3.63e-01 79.0% 59.0%
5e1vB00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 47.0 3.38e-01 88.0% 98.9%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 41.0 4.46e-01 82.0% 96.2%
7clyA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 41.0 3.49e-01 79.0% 87.5%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.56 46.0 3.64e-01 91.0% 89.2%
7alkA01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 3.54e-01 81.0% 89.4%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 43.0 3.98e-01 88.0% 97.7%
4ienA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 41.0 3.52e-01 88.0% 51.9%
3wodG00 2.30.30.1250 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.74e-01 84.0% 63.8%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.53 40.0 3.92e-01 81.0% 83.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 31.0 3.66e-01 74.0% 90.5%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.52 39.0 3.24e-01 79.0% 66.1%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.52 44.0 4.05e-01 94.0% 79.7%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 42.0 3.60e-01 96.0% 54.5%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.90e-01 87.0% 30.8%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.54e-01 80.0% 92.1%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3828471 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.72 40.0 3.60e-01 76.0% 40.3%
3681710 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.70 48.0 4.99e-01 71.0% 75.8%
None — 0.70 44.0 3.10e-01 71.0% 21.7%
3658408 4325.1.1.13 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.69 43.0 4.93e-01 71.0% 85.3%
3599435 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.66 51.0 3.39e-01 82.0% 31.0%
3223921 2484.1.1.259 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26742 0.66 44.0 4.65e-01 74.0% 75.6%
3579773 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.66 46.0 4.37e-01 73.0% 91.7%
3169693 5.1.4.80 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.66 48.0 3.26e-01 77.0% 23.6%
3926989 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 49.0 3.36e-01 80.0% 28.4%
3520733 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.65 52.0 3.44e-01 85.0% 25.0%
None — 0.65 43.0 3.17e-01 71.0% 26.0%
3600093 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.64 52.0 4.72e-01 88.0% 77.0%
3929718 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.64 50.0 3.17e-01 82.0% 18.7%
3253359 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 46.0 3.15e-01 77.0% 27.6%
4024178 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 53.0 3.48e-01 100.0% 23.3%
3606828 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.61 49.0 4.57e-01 88.0% 76.9%
3626832 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.61 44.0 2.82e-01 74.0% 83.1%
3752179 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 45.0 4.13e-01 78.0% 71.5%
3505993 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 45.0 3.13e-01 80.0% 27.0%
3478818 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 3.20e-01 87.0% 25.1%
3372251 6129.1.1.0 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.59 36.0 4.21e-01 90.0% 88.6%
3420395 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 46.0 3.17e-01 84.0% 25.8%
3215136 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 39.0 3.78e-01 71.0% 60.0%
3834102 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 47.0 3.09e-01 88.0% 31.9%
3230015 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 42.0 2.74e-01 77.0% 20.4%
3429744 3347.1.1.2 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF1005 0.57 47.0 3.86e-01 87.0% 50.9%
3586655 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 44.0 3.62e-01 85.0% 89.5%
4010500 7503.1.1.24 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF25851 0.56 43.0 3.80e-01 84.0% 90.3%
3578827 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.56 45.0 3.61e-01 84.0% 59.5%
3800723 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.55 43.0 3.26e-01 85.0% 56.0%
2549178 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.54 41.0 3.96e-01 81.0% 69.9%
3801065 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.54 42.0 3.15e-01 83.0% 50.8%
2771050 11.2.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MNNL 0.54 41.0 3.57e-01 81.0% 91.7%
3870002 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.53 38.0 2.48e-01 73.0% 30.7%
4407404 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 36.0 3.37e-01 71.0% 60.0%
3611566 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 42.0 2.87e-01 89.0% 36.0%
3789884 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.52 39.0 3.06e-01 81.0% 53.2%
3936894 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.52 40.0 3.12e-01 84.0% 53.9%
3928747 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.51 40.0 2.60e-01 84.0% 30.9%
3583444 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.51 41.0 3.91e-01 87.0% 87.0%
3508261 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.50 39.0 3.08e-01 85.0% 52.0%