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NC_055031.1__YP_010082499.1__KMD20_gp64__00064

Bact-Vir

Identity

Accession:: NC_055031 ↗
Kingdom:: phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Halcyonevirus› Paenibacillus_phage_Unity

TaxID: 2282396

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-86

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2yq1C00	3.30.70.390	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain	0.61	43.0	3.76e-01	73.3%	72.5%
1bpvA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.58	38.0	3.63e-01	73.3%	55.8%
3egrA00	3.10.20.520	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B	0.57	39.0	4.32e-01	74.4%	96.8%
2ypyA00	3.30.70.390	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain	0.56	43.0	3.74e-01	81.4%	94.0%
3rgzA02	3.30.1490.310	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.56	38.0	4.24e-01	80.2%	100.0%
4gvbA00	3.30.70.440	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Killer toxin KP6 alpha-subunit	0.55	39.0	4.06e-01	73.3%	92.2%
3oq2A00	3.30.70.240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	39.0	3.81e-01	75.6%	87.9%
1yd0A00	3.40.1440.10	Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease	0.53	37.0	3.72e-01	72.1%	75.3%
2jqzA00	2.60.40.150	Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain	0.53	36.0	3.18e-01	73.3%	45.8%
1unnC00	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.52	40.0	3.75e-01	91.9%	66.7%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4876718	3397.1.1.1 ↗	a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22	0.72	56.0	5.43e-01	83.7%	82.3%
3707484	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.62	45.0	4.37e-01	76.7%	92.9%
1122231	304.15.1.4 ↗	a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain › LANA1_DNA-bd	0.61	43.0	3.76e-01	73.3%	72.5%
4886584	3115.6.1.1 ↗	a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY	0.61	43.0	4.63e-01	73.3%	90.0%
3301429	3397.1.1.1 ↗	a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22	0.60	44.0	4.06e-01	76.7%	60.9%
199962	3115.5.1.1 ↗	a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB	0.57	39.0	4.32e-01	74.4%	96.8%
5065436	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.54	37.0	4.16e-01	72.1%	98.4%
4996552	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.54	38.0	3.82e-01	73.3%	77.6%
3712193	887.1.1.0 ↗	a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e	0.52	37.0	3.66e-01	76.7%	78.9%
3308035	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.51	35.0	3.05e-01	73.3%	44.3%
5069372	11.1.1.103 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB	0.50	32.0	3.00e-01	70.9%	48.7%
3475182	4342.1.1.1 ↗	alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region	0.50	35.0	2.78e-01	73.3%	92.0%