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NC_055031.1__YP_010082501.1__KMD20_gp66__00066

Bact-Vir

Identity

Accession:: NC_055031 ↗
Kingdom:: phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Halcyonevirus› Paenibacillus_phage_Unity

TaxID: 2282396

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-121

PDB

Domain cluster: rep: EU399241.1__ABY90398.1__HAPgp30__00030__D90-194

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17400.8 best	DUF5406	87.2	1.40e-24	99.0%	90.0%

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jxtA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.76	45.0	5.09e-01	100.0%	77.6%
1vwxS02	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.75	44.0	5.02e-01	100.0%	77.6%
1nc7A00	2.60.290.11	Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like	0.69	38.0	3.61e-01	98.0%	45.7%
4kyzA00	3.30.70.600	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10	0.64	36.0	3.03e-01	98.0%	32.3%
1rvjH02	3.90.50.10	Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2	0.64	38.0	3.44e-01	90.0%	44.7%
1qysA00	3.30.1710.10	Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein	0.63	35.0	3.66e-01	97.0%	58.7%
2hj1A00	3.10.20.280	Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like	0.62	36.0	4.01e-01	96.0%	74.0%
2nytD00	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.62	37.0	3.04e-01	99.0%	33.0%
5jpnB04	2.60.120.1540	Mainly Beta › Sandwich › Jelly Rolls ›	0.61	33.0	3.08e-01	100.0%	42.1%
2jvfA00	3.30.1710.10	Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein	0.60	34.0	3.51e-01	98.0%	58.5%
1flmA00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.59	37.0	3.52e-01	100.0%	51.6%
2xskA00	2.60.40.2420	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.57	33.0	3.46e-01	100.0%	60.0%
3jb9H00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.56	36.0	4.01e-01	96.0%	84.2%
1zq1A01	2.30.30.520	Mainly Beta › Roll › SH3 type barrels. ›	0.55	34.0	3.81e-01	99.0%	80.5%
6mv2A02	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.54	38.0	3.83e-01	97.0%	70.5%
7q61A01	2.60.40.1940	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	33.0	3.26e-01	100.0%	56.9%
1w99A02	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.52	38.0	3.08e-01	100.0%	39.8%
1d3bC00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.52	32.0	3.67e-01	100.0%	85.9%
3oymA02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.52	29.0	3.42e-01	86.0%	78.6%
1h2cA00	2.70.20.20	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain	0.52	46.0	4.29e-01	100.0%	96.0%
6v4xC01	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.51	34.0	3.40e-01	97.0%	66.0%
3d0jA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.50	36.0	3.31e-01	77.0%	72.5%

ECOD (41)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5012895	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.82	45.0	5.96e-01	98.0%	100.0%
4939739	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.81	48.0	6.11e-01	100.0%	100.0%
4967222	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.79	46.0	5.87e-01	100.0%	98.3%
5074648	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.79	46.0	5.29e-01	100.0%	78.7%
5014684	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.78	44.0	5.55e-01	100.0%	96.6%
4160542	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.77	45.0	5.71e-01	99.0%	100.0%
4969863	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.77	45.0	5.16e-01	100.0%	78.7%
4951473	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.77	46.0	5.63e-01	100.0%	95.2%
5067865	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.77	45.0	5.31e-01	100.0%	84.3%
2831852	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.76	45.0	4.55e-01	100.0%	58.4%
5000510	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.76	44.0	5.07e-01	100.0%	77.3%
4996552	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.76	45.0	4.87e-01	100.0%	69.4%
4943401	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.76	46.0	4.99e-01	100.0%	71.8%
5065436	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.76	45.0	5.47e-01	100.0%	92.2%
5030993	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.76	45.0	4.97e-01	100.0%	73.8%
4937773	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.75	44.0	5.51e-01	99.0%	100.0%
4013514	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.75	45.0	4.48e-01	100.0%	57.1%
4990637	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.75	45.0	4.96e-01	100.0%	73.5%
3287357	3115.3.1.0 ↗	a+b two layers › GP2-like › P56 › P56	0.71	42.0	5.29e-01	97.0%	100.0%
3621211	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.70	29.0	4.29e-01	75.0%	92.5%
3734418	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.69	40.0	2.78e-01	100.0%	17.6%
3892842	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.66	39.0	4.64e-01	100.0%	89.2%
3588755	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.65	44.0	4.97e-01	100.0%	94.6%
3979798	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.63	44.0	4.30e-01	100.0%	65.5%
3508990	3115.3.1.2 ↗	a+b two layers › GP2-like › P56 › P56 › DUF2922	0.63	39.0	4.60e-01	99.0%	98.4%
3905094	302.1.1.1 ↗	a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C	0.62	41.0	3.78e-01	100.0%	50.4%
5035835	4.6.1.0 ↗	beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain	0.61	36.0	4.56e-01	87.0%	98.3%
3510040	3115.3.1.2 ↗	a+b two layers › GP2-like › P56 › P56 › DUF2922	0.60	40.0	4.40e-01	97.0%	85.0%
4000622	4.1.1.287 ↗	beta barrels › SH3 › SH3 › SH3 › DUF5641	0.60	34.0	3.23e-01	85.0%	46.7%
3581817	4.1.1.287 ↗	beta barrels › SH3 › SH3 › SH3 › DUF5641	0.60	35.0	4.21e-01	86.0%	89.2%
3204836	2492.1.1.32 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › OTT_1508_deam	0.60	37.0	3.17e-01	100.0%	39.4%
3198151	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.60	30.0	3.05e-01	78.0%	48.0%
5053865	821.1.1.0 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease	0.59	37.0	3.85e-01	100.0%	67.8%
3586469	4.1.1.287 ↗	beta barrels › SH3 › SH3 › SH3 › DUF5641	0.59	35.0	3.80e-01	89.0%	69.4%
3616769	4.1.1.287 ↗	beta barrels › SH3 › SH3 › SH3 › DUF5641	0.59	35.0	3.62e-01	88.0%	62.1%
5049906	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.58	27.0	3.26e-01	82.0%	65.0%
3794500	4.1.1.287 ↗	beta barrels › SH3 › SH3 › SH3 › DUF5641	0.58	36.0	2.97e-01	91.0%	34.1%
3196282	219.1.1.93 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540	0.57	38.0	3.61e-01	100.0%	57.5%
3968768	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.55	40.0	4.45e-01	95.0%	100.0%
2391272	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.52	34.0	3.51e-01	97.0%	71.0%
3790610	376.1.1.21 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2	0.51	31.0	3.74e-01	79.0%	93.8%