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NC_055033.1__YP_010082630.1__KMD22_gp21__00021
Bact-VirNC_055033.1__YP_010082630.1__KMD22_gp21__00021
Identity
- Accession:
- NC_055033 ↗
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Taxonomy
TaxID: 1772314
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-64
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f4qA02 | 1.10.132.120 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.81 | 57.0 | 4.40e-01 | 80.3% | 35.4% |
| 4nlbA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.74 | 61.0 | 5.21e-01 | 88.5% | 84.0% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.74 | 65.0 | 5.65e-01 | 100.0% | 89.5% |
| 3cymA03 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.73 | 54.0 | 4.75e-01 | 78.7% | 86.4% |
| 2nsaA00 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.69 | 58.0 | 4.22e-01 | 93.4% | 34.1% |
| 3safA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.68 | 54.0 | 4.64e-01 | 88.5% | 79.0% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.67 | 53.0 | 5.13e-01 | 90.2% | 83.1% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.66 | 51.0 | 4.97e-01 | 91.8% | 76.5% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.66 | 48.0 | 4.47e-01 | 78.7% | 75.9% |
| 3g88A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 39.0 | 2.59e-01 | 90.2% | 15.5% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 49.0 | 3.74e-01 | 85.2% | 77.9% |
| 7byjA01 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.63 | 51.0 | 4.07e-01 | 88.5% | 75.8% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.63 | 39.0 | 4.10e-01 | 85.2% | 69.1% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 51.0 | 4.98e-01 | 88.5% | 97.0% |
| 1rm6D04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.61 | 50.0 | 3.31e-01 | 88.5% | 25.0% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.61 | 42.0 | 4.21e-01 | 85.2% | 68.8% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.60 | 49.0 | 4.39e-01 | 98.4% | 80.2% |
| 2dofA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.60 | 42.0 | 3.79e-01 | 78.7% | 52.9% |
| 1st6A04 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 45.0 | 3.58e-01 | 80.3% | 75.2% |
| 3tuiA00 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.59 | 47.0 | 3.31e-01 | 91.8% | 74.5% |
| 3iylB02 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.59 | 47.0 | 3.72e-01 | 90.2% | 44.8% |
| 3rmiA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.59 | 41.0 | 3.41e-01 | 72.1% | 59.0% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.59 | 45.0 | 4.30e-01 | 83.6% | 100.0% |
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.58 | 46.0 | 3.69e-01 | 86.9% | 43.8% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.58 | 47.0 | 4.17e-01 | 88.5% | 81.4% |
| 8dtqA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 42.0 | 3.82e-01 | 78.7% | 63.4% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 40.0 | 3.93e-01 | 73.8% | 69.7% |
| 3c2bA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 48.0 | 3.64e-01 | 98.4% | 83.7% |
| 3l09A01 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 42.0 | 3.61e-01 | 83.6% | 56.1% |
| 2o5iN05 | 1.10.40.90 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › | 0.54 | 43.0 | 4.56e-01 | 93.4% | 100.0% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 38.0 | 4.03e-01 | 80.3% | 85.5% |
| 3m1mA03 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.52 | 45.0 | 3.80e-01 | 100.0% | 95.5% |
| 5b1aH00 | 1.10.10.140 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cytochrome c oxidase, subunit VIb | 0.52 | 47.0 | 4.25e-01 | 98.4% | 87.3% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 44.0 | 2.95e-01 | 98.4% | 77.2% |
| 1bhaA00 | 1.10.287.170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 45.0 | 4.37e-01 | 95.1% | 94.0% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3512341 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 57.0 | 5.43e-01 | 88.5% | 65.7% |
| 4594772 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.78 | 63.0 | 4.51e-01 | 93.4% | 31.8% |
| 4610647 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.77 | 62.0 | 4.40e-01 | 93.4% | 30.3% |
| 3563471 | 2484.1.1.104 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 | 0.77 | 67.0 | 4.40e-01 | 98.4% | 81.6% |
| 4366824 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.76 | 61.0 | 4.36e-01 | 93.4% | 30.9% |
| 4098538 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.75 | 62.0 | 4.35e-01 | 93.4% | 29.7% |
| 4447203 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.75 | 61.0 | 4.16e-01 | 93.4% | 25.7% |
| 5038736 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.73 | 54.0 | 4.63e-01 | 78.7% | 50.5% |
| 4283614 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 54.0 | 4.52e-01 | 85.2% | 46.7% |
| 4121585 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 54.0 | 4.84e-01 | 85.2% | 57.6% |
| 3890757 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.72 | 54.0 | 4.73e-01 | 85.2% | 54.4% |
| 3335172 | 108.1.1.198 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Trigger_C | 0.68 | 55.0 | 4.58e-01 | 90.2% | 51.8% |
| 3295940 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.68 | 52.0 | 5.45e-01 | 82.0% | 98.2% |
| 4038003 | 632.2.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA-like | 0.67 | 46.0 | 4.31e-01 | 75.4% | 58.7% |
| 5078767 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.65 | 55.0 | 3.70e-01 | 93.4% | 51.1% |
| 3589565 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.63 | 54.0 | 3.71e-01 | 96.7% | 72.6% |
| 5057042 | 605.1.1.355 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › RDD | 0.63 | 51.0 | 3.95e-01 | 90.2% | 53.3% |
| 3748535 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.62 | 51.0 | 3.59e-01 | 98.4% | 29.7% |
| 5026568 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.61 | 50.0 | 3.63e-01 | 91.8% | 31.4% |
| 4595003 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.61 | 48.0 | 3.55e-01 | 90.2% | 33.7% |
| 3580612 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.61 | 49.0 | 3.72e-01 | 91.8% | 64.5% |
| 4327215 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.60 | 50.0 | 4.09e-01 | 91.8% | 67.0% |
| 4676221 | 1188.1.1.3 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Mntp | 0.58 | 45.0 | 3.34e-01 | 90.2% | 62.2% |
| 3605712 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 44.0 | 4.02e-01 | 82.0% | 65.0% |
| 3263522 | 5050.1.1.11 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 | 0.55 | 43.0 | 3.15e-01 | 93.4% | 77.1% |
| 3165421 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.53 | 46.0 | 3.57e-01 | 93.4% | 76.9% |