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NC_055034.1__YP_010082725.1__KMD23_gp17__00017

Bact-Vir

Identity

Accession:: NC_055034 ↗
Kingdom:: phage

Quality

68.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Laroyevirus› Arthrobacter_phage_Wheelbite

TaxID: 2015873

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 401-521

PDB

Domain cluster: rep: NC_054446.1__YP_010051674.1__KDW76_gp04__00004__D543-637

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1orqC01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.60	50.0	4.16e-01	91.7%	86.7%
2jbwA01	1.20.1440.110	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase	0.56	38.0	4.03e-01	100.0%	79.6%
2bmuB00	3.40.1160.10	Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like	0.56	51.0	4.13e-01	100.0%	84.5%
1xoiA01	3.40.50.2000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B;	0.54	39.0	2.64e-01	74.4%	45.3%
2xi5A00	3.40.91.60	Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease ›	0.53	43.0	3.79e-01	89.3%	98.4%
1rj1A00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.51	41.0	3.93e-01	90.9%	89.9%
3wi3B00	1.20.58.2130	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	45.0	3.78e-01	100.0%	60.8%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4080125	616.1.1.45 ↗	alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › MIS13	0.57	34.0	4.17e-01	90.1%	92.5%
3807513	633.4.1.0 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor	0.56	47.0	4.54e-01	90.9%	94.8%
4971971	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.54	32.0	3.07e-01	90.1%	49.3%
4215393	4067.1.1.1 ↗	alpha bundles › FdhE-like › FdhE-like › FdhE-like › FdhE	0.53	40.0	3.64e-01	90.1%	58.3%
4262617	5061.1.1.1 ↗	alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY	0.52	40.0	2.93e-01	100.0%	27.9%
3171774	1075.1.1.9 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › DUF3533	0.52	42.0	3.56e-01	89.3%	80.0%
4509685	589.1.1.1 ↗	alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N	0.51	42.0	3.73e-01	88.4%	95.4%
4084416	141.1.1.3 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA	0.51	46.0	3.45e-01	100.0%	90.0%
3784990	1075.1.1.9 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › DUF3533	0.51	43.0	3.70e-01	100.0%	57.0%

D2 medium residues 1-110

PDB

D3 medium residues 111-314

PDB

Domain cluster: rep: FN436268.1__CBA17767.1__AHIS1_p055__00055__D102-271

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04233.20 best	Phage_Mu_F	46.9	6.10e-12	69.1%	77.7%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3lcnB00	1.10.340.40	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain	0.66	28.0	4.05e-01	80.9%	83.5%
2dq0A01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.59	28.0	3.77e-01	76.0%	84.1%
4hehA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.54	20.0	3.04e-01	82.4%	79.5%
1x4rA01	3.30.720.50	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 ›	0.52	18.0	2.76e-01	81.4%	73.4%
2hxoA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	31.0	3.57e-01	79.4%	84.7%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3303649	3755.3.1.310 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CemA	0.68	41.0	4.52e-01	81.9%	72.4%
4939889	547.1.1.1 ↗	alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer	0.66	29.0	3.68e-01	81.4%	66.7%
3964369	6108.1.1.8 ↗	alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Phage_Mu_F	0.62	51.0	4.71e-01	84.3%	79.6%
3279105	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.52	41.0	3.61e-01	82.4%	96.1%
3080489	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.52	40.0	3.47e-01	81.4%	93.5%