Back to structures

NC_055034.1__YP_010082794.1__KMD23_gp86__00086

Bact-Vir

NC_055034.1__YP_010082794.1__KMD23_gp86__00086

Identity

Accession:
NC_055034 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-102
PDB
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.68 50.0 4.87e-01 80.0% 69.9%
4uy8X00 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.58 44.0 4.43e-01 82.7% 92.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932123 377.7.1.2 few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH 0.83 58.0 6.03e-01 84.0% 77.1%
5060915 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.83 55.0 5.50e-01 72.0% 68.0%
4517886 377.1.1.3 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.80 47.0 6.00e-01 70.7% 100.0%
3955812 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.68 54.0 4.99e-01 84.0% 69.9%
5070539 3380.1.1.0 a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 0.58 37.0 4.28e-01 70.7% 89.1%
3611182 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.56 35.0 3.49e-01 76.0% 58.7%