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NC_055034.1__YP_010082800.1__KMD23_gp92__00092

Bact-Vir

NC_055034.1__YP_010082800.1__KMD23_gp92__00092

Identity

Accession:
NC_055034 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Laroyevirus› Arthrobacter_phage_Wheelbite

TaxID: 2015873

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-139
PDB
Domain cluster: rep: JN638751.1__AEO93772.1__G_514__00506__D4-138
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06094.18 best GGACT 69.2 6.60e-19 92.5% 99.2%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qikA01 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.93 74.0 8.21e-01 97.0% 100.0%
1v30A00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.90 74.0 7.89e-01 98.5% 95.8%
5c5zA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.85 75.0 7.71e-01 97.8% 96.9%
2g0qA01 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.84 66.0 7.09e-01 86.6% 93.9%
2i5tA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.75 71.0 6.47e-01 100.0% 90.5%
2qikA02 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.73 69.0 6.49e-01 100.0% 95.5%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.63 26.0 3.68e-01 85.8% 80.6%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5020439 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.90 81.0 8.42e-01 97.8% 100.0%
4443063 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.90 77.0 8.16e-01 97.0% 99.2%
4224543 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.87 77.0 8.02e-01 97.0% 98.4%
5049926 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.86 70.0 7.58e-01 87.3% 99.1%
5040612 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.86 79.0 8.11e-01 96.3% 100.0%
1680418 810.1.1.5 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AH_C 0.85 75.0 7.71e-01 97.8% 96.9%
3599518 810.1.1.0 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) 0.85 80.0 7.13e-01 99.3% 100.0%
3945757 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.85 67.0 7.43e-01 85.1% 100.0%
3285708 810.1.1.5 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AH_C 0.84 75.0 7.80e-01 98.5% 100.0%
3927947 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.84 79.0 7.72e-01 100.0% 95.9%
3641482 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.83 79.0 7.21e-01 100.0% 85.1%
3630947 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.83 63.0 7.02e-01 83.6% 98.1%
3207761 810.1.1.0 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) 0.82 70.0 7.36e-01 97.8% 98.3%
5023112 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.82 63.0 6.95e-01 82.8% 97.2%
3314709 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.82 78.0 7.01e-01 100.0% 88.6%
4973218 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.81 67.0 7.25e-01 87.3% 100.0%
3185352 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.81 77.0 7.06e-01 100.0% 93.9%
4997425 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.80 76.0 7.48e-01 99.3% 99.3%
3455842 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.79 63.0 6.82e-01 83.6% 100.0%
5009355 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.77 69.0 6.93e-01 96.3% 93.3%
3632224 810.1.1.0 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) 0.76 57.0 6.16e-01 83.6% 90.4%
3404781 810.1.1.3 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 0.75 71.0 6.28e-01 100.0% 88.6%
3773546 810.1.1.3 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 0.75 71.0 6.42e-01 100.0% 88.4%
5066657 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.74 61.0 6.05e-01 88.8% 82.9%
3278316 810.1.1.3 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 0.74 70.0 6.61e-01 100.0% 97.4%
3254582 810.1.1.1 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › ChaC 0.74 70.0 6.10e-01 100.0% 96.3%
3959699 810.1.1.0 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) 0.74 69.0 6.65e-01 100.0% 100.0%
3947582 810.1.1.1 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › ChaC 0.74 69.0 6.07e-01 99.3% 89.4%
3592782 810.1.1.1 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › ChaC 0.71 67.0 5.91e-01 99.3% 90.8%
5041736 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 33.0 4.33e-01 83.6% 78.7%
3198306 810.1.1.0 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) 0.68 62.0 5.78e-01 97.0% 84.2%
5056705 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.62 36.0 4.61e-01 82.1% 97.5%
4937870 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.55 38.0 4.39e-01 82.1% 97.9%
4309637 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.55 35.0 4.20e-01 82.1% 100.0%
4938780 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.53 36.0 4.17e-01 86.6% 97.9%
5080834 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 37.0 4.10e-01 87.3% 96.2%
5079022 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.50 38.0 4.14e-01 86.6% 96.4%
4980704 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 32.0 3.45e-01 81.3% 76.4%