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NC_055048.1__YP_010083799.1__KMD47_gp31__00031

Bact-Vir

NC_055048.1__YP_010083799.1__KMD47_gp31__00031

Identity

Accession:
NC_055048 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Triavirus› Staphylococcus_phage_phiSa2wa_st78

TaxID: 2060954

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-61
PDB
Domain cluster: rep: OM350012.1__ULF48960.1__X__00047__D91-151
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 55.0 5.25e-01 100.0% 68.2%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 5.04e-01 100.0% 84.0%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.31e-01 100.0% 79.4%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 5.35e-01 100.0% 90.9%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 5.01e-01 100.0% 79.0%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.65 46.0 4.04e-01 75.4% 97.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 5.17e-01 100.0% 86.2%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 5.20e-01 100.0% 79.5%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 56.0 5.36e-01 98.2% 95.5%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 5.19e-01 100.0% 81.7%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 4.72e-01 96.5% 66.3%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.23e-01 98.2% 98.4%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.82e-01 100.0% 94.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.83e-01 100.0% 70.1%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.80e-01 100.0% 77.3%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.23e-01 100.0% 92.4%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 4.46e-01 100.0% 57.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.41e-01 100.0% 68.1%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.78e-01 100.0% 75.0%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.61 43.0 3.63e-01 75.4% 85.6%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 55.0 5.41e-01 100.0% 100.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 4.94e-01 94.7% 100.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.60 48.0 4.63e-01 100.0% 77.3%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 53.0 5.30e-01 100.0% 100.0%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 4.09e-01 84.2% 69.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.69e-01 100.0% 77.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 4.85e-01 100.0% 88.6%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.58e-01 96.5% 90.6%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.59 42.0 3.15e-01 78.9% 95.1%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.69e-01 94.7% 90.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 4.61e-01 98.2% 76.9%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 47.0 4.19e-01 87.7% 85.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 44.0 4.66e-01 98.2% 100.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.64e-01 96.5% 92.6%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 51.0 4.86e-01 100.0% 98.5%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.52e-01 98.2% 77.1%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 38.0 3.52e-01 84.2% 54.8%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.55 48.0 4.46e-01 100.0% 82.4%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.38e-01 100.0% 92.7%
2iq1A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 40.0 2.66e-01 80.7% 35.4%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 4.22e-01 98.2% 75.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.62e-01 100.0% 91.9%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.54 41.0 3.67e-01 84.2% 93.9%
2qetA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.54 44.0 4.04e-01 96.5% 88.9%
2y9wA00 1.10.1280.10 Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase 0.53 43.0 2.65e-01 94.7% 68.0%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 45.0 4.00e-01 100.0% 72.1%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 42.0 3.93e-01 94.7% 76.6%
1wdkC01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 43.0 2.97e-01 94.7% 81.2%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 4.22e-01 100.0% 90.3%
2askA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.51 38.0 3.26e-01 84.2% 82.2%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 38.0 2.66e-01 82.5% 74.5%
2w00A02 3.90.640.50 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.50 37.0 3.52e-01 84.2% 89.0%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.76 56.0 5.41e-01 100.0% 69.2%
4116921 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.75 55.0 5.41e-01 98.2% 73.3%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.72 53.0 5.43e-01 100.0% 83.6%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.56e-01 100.0% 87.3%
2392898 210.1.2.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain 0.70 50.0 3.35e-01 77.2% 97.0%
3290899 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 54.0 5.03e-01 100.0% 68.6%
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.69 60.0 5.81e-01 100.0% 96.9%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.69 52.0 5.31e-01 100.0% 85.5%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.69 53.0 5.12e-01 100.0% 73.8%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 52.0 5.28e-01 100.0% 85.5%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.32e-01 100.0% 78.1%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.52e-01 100.0% 90.9%
5002601 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.67 51.0 5.11e-01 100.0% 79.7%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.67 53.0 4.90e-01 100.0% 66.7%
4929875 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 56.0 4.65e-01 100.0% 53.0%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.67 53.0 4.84e-01 100.0% 66.7%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.04e-01 98.2% 77.4%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 54.0 5.06e-01 100.0% 72.9%
4142364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 47.0 4.54e-01 100.0% 66.2%
3256431 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.66 49.0 4.41e-01 93.0% 57.5%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 52.0 5.04e-01 100.0% 76.9%
3741020 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.17e-01 100.0% 75.7%
4400642 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.65 49.0 4.39e-01 100.0% 56.5%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 53.0 5.26e-01 100.0% 85.0%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 50.0 4.77e-01 100.0% 70.0%
4979291 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 52.0 4.77e-01 100.0% 68.0%
4226849 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 52.0 4.65e-01 100.0% 63.7%
4459365 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 52.0 4.68e-01 100.0% 65.0%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 50.0 4.75e-01 100.0% 71.4%
3451280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 3.81e-01 100.0% 33.5%
3523918 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.64 57.0 5.44e-01 100.0% 86.2%
3224441 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.17e-01 94.7% 82.4%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.63 53.0 5.08e-01 100.0% 81.5%
2427475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.84e-01 100.0% 76.1%
3554995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 56.0 5.23e-01 100.0% 85.7%
4134876 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.63 56.0 3.99e-01 100.0% 36.4%
3907870 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 4.92e-01 98.2% 74.7%
3619599 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 56.0 5.09e-01 100.0% 78.7%
5053225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 56.0 4.60e-01 100.0% 68.0%
4252954 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 49.0 4.68e-01 100.0% 72.9%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 51.0 4.72e-01 100.0% 70.7%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.62 52.0 4.81e-01 100.0% 72.0%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 55.0 5.14e-01 98.2% 82.9%
3879164 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.62 53.0 4.83e-01 94.7% 80.0%
3173941 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.14e-01 100.0% 51.0%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 53.0 5.30e-01 96.5% 98.3%
3915732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 54.0 4.72e-01 98.2% 70.6%
3679362 4.1.1.351 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.61 54.0 4.78e-01 100.0% 100.0%
4844109 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 46.0 4.33e-01 93.0% 66.2%
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 54.0 5.35e-01 98.2% 98.3%
5059830 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.61 54.0 4.67e-01 100.0% 72.2%
3401198 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 54.0 4.63e-01 100.0% 77.8%
5047427 75.1.1.4 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like 0.61 53.0 4.22e-01 100.0% 99.2%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.01e-01 98.2% 85.7%
3546309 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 54.0 4.93e-01 100.0% 81.3%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 54.0 5.08e-01 100.0% 94.3%
3668787 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.60 53.0 4.43e-01 100.0% 79.0%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 54.0 4.94e-01 100.0% 89.3%
4396206 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.60 43.0 4.23e-01 75.4% 98.3%
4277213 4.1.1.431 ↗ beta barrels › SH3 › SH3 › SH3 › PF27152 0.60 46.0 4.35e-01 100.0% 70.0%
3502290 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.77e-01 98.2% 85.0%
162525 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 52.0 4.34e-01 100.0% 58.8%
3761318 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.59 51.0 4.86e-01 100.0% 87.1%
4132516 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.59 51.0 4.65e-01 100.0% 76.2%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 45.0 4.20e-01 100.0% 65.3%
3622389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.34e-01 100.0% 75.4%
3846130 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.58 50.0 3.42e-01 98.2% 27.8%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 3.89e-01 100.0% 52.6%
3902990 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.58 50.0 4.31e-01 98.2% 63.3%
3233379 390.1.1.7 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.57 34.0 3.20e-01 91.2% 44.0%
3853598 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.57 50.0 4.47e-01 98.2% 71.2%
3754343 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.57 49.0 4.55e-01 98.2% 76.0%
3025579 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 48.0 4.73e-01 94.7% 100.0%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.56 44.0 4.14e-01 98.2% 69.3%
4443054 3115.1.1.9 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ 0.55 46.0 3.75e-01 100.0% 50.0%
3508713 382.1.1.25 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ 0.55 45.0 3.71e-01 100.0% 50.0%
5042330 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.55 44.0 4.20e-01 94.7% 92.9%
3603549 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.32e-01 100.0% 71.8%
4020073 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 47.0 4.48e-01 100.0% 85.7%
4991835 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 4.26e-01 82.5% 96.0%
4933648 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.52 40.0 3.90e-01 89.5% 93.8%