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NC_055050.1__YP_010083905.1__KMD50_gp05__00005
Bact-VirNC_055050.1__YP_010083905.1__KMD50_gp05__00005
Identity
- Accession:
- NC_055050 ↗
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Taxonomy
TaxID: 1983536
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-170
Domain cluster:
rep: IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449110__D102-238
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04586.23 best | Peptidase_S78 | 25.0 | 2.60e-05 | 88.8% | 64.2% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1o6eA00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.68 | 48.0 | 4.33e-01 | 72.2% | 64.0% |
| 5iroD00 | 2.60.40.3530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 30.0 | 3.70e-01 | 79.3% | 74.5% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.57 | 37.0 | 4.37e-01 | 79.9% | 94.8% |
| 7t8tA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 28.0 | 3.12e-01 | 92.9% | 58.0% |
| 3n89A02 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.55 | 25.0 | 2.78e-01 | 73.4% | 49.6% |
| 1x6oA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 27.0 | 3.72e-01 | 79.9% | 97.5% |
| 6x4tA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 29.0 | 3.82e-01 | 75.1% | 100.0% |
| 3fgvA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 27.0 | 3.48e-01 | 74.0% | 84.9% |
| 3ihmA02 | 3.30.9.40 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.51 | 29.0 | 3.14e-01 | 72.2% | 63.2% |
| 2f7lA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.51 | 27.0 | 3.63e-01 | 75.7% | 100.0% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.50 | 29.0 | 3.63e-01 | 75.7% | 94.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995675 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.83 | 65.0 | 6.67e-01 | 81.1% | 100.0% |
| 5083161 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.80 | 61.0 | 6.54e-01 | 78.1% | 100.0% |
| 3954964 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.79 | 57.0 | 6.10e-01 | 73.4% | 92.4% |
| 4929754 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.73 | 52.0 | 5.85e-01 | 72.2% | 95.4% |
| 5032717 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 39.0 | 4.54e-01 | 79.3% | 95.8% |
| 3837121 | 1.1.11.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like | 0.56 | 40.0 | 4.41e-01 | 80.5% | 89.9% |
| 4982458 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.56 | 24.0 | 3.53e-01 | 72.2% | 92.9% |
| 4947124 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.55 | 29.0 | 3.92e-01 | 74.6% | 100.0% |
| 4990940 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.54 | 28.0 | 3.91e-01 | 72.2% | 100.0% |
| 5064269 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.54 | 28.0 | 3.88e-01 | 73.4% | 100.0% |
| 3173046 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.53 | 25.0 | 3.28e-01 | 72.2% | 79.8% |
| 3740846 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.52 | 34.0 | 3.91e-01 | 76.9% | 93.9% |
| 3536928 | 11.1.1.668 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_M | 0.52 | 38.0 | 4.29e-01 | 79.9% | 99.2% |
| 3604153 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.52 | 26.0 | 3.59e-01 | 74.6% | 100.0% |
| 3891278 | 11.1.1.589 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig | 0.51 | 36.0 | 4.06e-01 | 88.2% | 93.8% |
| 4952140 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.51 | 26.0 | 3.55e-01 | 76.3% | 100.0% |