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NC_055059.1__YP_010084033.1__KMD60_gp34__00009
Bact-VirNC_055059.1__YP_010084033.1__KMD60_gp34__00009
Identity
- Accession:
- NC_055059 ↗
- Kingdom:
- phage
Quality
69.7
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Tectiliviricetes›
Kalamavirales›
Tectiviridae›
Deltatectivirus›
Streptomyces_phage_Forthebois
TaxID: 2562185
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-112
Domain cluster:
rep: KY817360.1__ARK07689.1__Toil_gp06__00006__D40-91
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5mj3A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 48.0 | 4.53e-01 | 85.7% | 60.7% |
| 1nkgA02 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.68 | 47.0 | 4.45e-01 | 77.1% | 60.0% |
| 1uc6A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 51.0 | 4.43e-01 | 81.4% | 58.7% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 47.0 | 4.43e-01 | 77.1% | 67.4% |
| 3pihA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.64 | 46.0 | 4.65e-01 | 78.6% | 76.4% |
| 7u7nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 45.0 | 4.09e-01 | 75.7% | 67.0% |
| 7y8sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 45.0 | 4.10e-01 | 75.7% | 67.4% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 45.0 | 4.04e-01 | 75.7% | 70.3% |
| 5z0uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 46.0 | 3.84e-01 | 78.6% | 63.7% |
| 3aqoA02 | 3.30.1360.200 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.62 | 47.0 | 3.76e-01 | 81.4% | 78.7% |
| 1f6fB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 45.0 | 4.09e-01 | 78.6% | 66.0% |
| 5e55B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 46.0 | 4.17e-01 | 81.4% | 68.8% |
| 3rpiB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 47.0 | 4.21e-01 | 85.7% | 75.5% |
| 2yuxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 3.69e-01 | 81.4% | 58.3% |
| 4mloA01 | 2.60.120.810 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 35.0 | 2.71e-01 | 70.0% | 27.7% |
| 1c4pC00 | 3.10.20.180 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 41.0 | 3.44e-01 | 81.4% | 93.2% |
| 4r7rA00 | 3.30.1490.410 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 | 0.54 | 39.0 | 3.31e-01 | 78.6% | 54.9% |
| 1nlqE00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.53 | 40.0 | 3.67e-01 | 84.3% | 60.2% |
| 3dr6B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 42.0 | 3.31e-01 | 94.3% | 85.2% |
| 3u2gA02 | 2.60.98.40 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain | 0.52 | 41.0 | 3.50e-01 | 91.4% | 59.7% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.52 | 41.0 | 3.35e-01 | 88.6% | 62.1% |
| 3ld2B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 44.0 | 3.38e-01 | 94.3% | 86.4% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 37.0 | 2.75e-01 | 77.1% | 59.6% |
| 4n06A01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.51 | 40.0 | 3.83e-01 | 85.7% | 100.0% |
| 8f66A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 43.0 | 3.19e-01 | 100.0% | 48.6% |
| 1ptmA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.50 | 43.0 | 2.84e-01 | 100.0% | 86.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3675525 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.75 | 51.0 | 5.26e-01 | 71.4% | 75.0% |
| 5059796 | 4326.1.1.0 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like | 0.73 | 52.0 | 5.29e-01 | 74.3% | 87.0% |
| 2028252 | 3986.2.1.1 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › Dmd | 0.72 | 56.0 | 5.85e-01 | 84.3% | 93.8% |
| 3710685 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.71 | 39.0 | 3.03e-01 | 77.1% | 23.9% |
| 3840071 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 51.0 | 3.27e-01 | 82.9% | 23.5% |
| 3182197 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.65 | 39.0 | 3.24e-01 | 81.4% | 34.2% |
| 3616178 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.65 | 49.0 | 4.50e-01 | 81.4% | 70.0% |
| 4382937 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.63 | 48.0 | 3.14e-01 | 81.4% | 37.4% |
| 3655079 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.63 | 36.0 | 3.04e-01 | 90.0% | 30.9% |
| 4024040 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.62 | 43.0 | 4.47e-01 | 74.3% | 90.8% |
| 3698942 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.62 | 39.0 | 3.16e-01 | 90.0% | 33.3% |
| 4988978 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.61 | 39.0 | 3.30e-01 | 90.0% | 38.3% |
| 3424280 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.60 | 35.0 | 3.18e-01 | 90.0% | 40.0% |
| 4826872 | 2010.1.1.4 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › FakA-like_C | 0.59 | 46.0 | 3.98e-01 | 82.9% | 80.6% |
| 5004341 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.58 | 42.0 | 2.55e-01 | 78.6% | 38.7% |
| 5059227 | 206.1.3.41 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter | 0.55 | 45.0 | 3.10e-01 | 88.6% | 40.9% |
| 4606244 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.52 | 31.0 | 3.35e-01 | 70.0% | 72.7% |