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NC_055060.1__YP_010084065.1__KMD61_gp05__00005

Bact-Vir

NC_055060.1__YP_010084065.1__KMD61_gp05__00005

Identity

Accession:
NC_055060 ↗
Kingdom:
phage

Quality

65.1 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Tectiliviricetes› Kalamavirales› Tectiviridae› Deltatectivirus› Streptomyces_phage_WheeHeim

TaxID: 2500797

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 63-113
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 47.0 3.86e-01 80.4% 89.6%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 40.0 2.79e-01 78.4% 22.6%
1wmvA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 33.0 3.67e-01 70.6% 100.0%
3ey7A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 39.0 3.00e-01 84.3% 28.9%
4bbyA02 3.30.160.650 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 39.0 4.15e-01 94.1% 81.8%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.58 37.0 3.93e-01 86.3% 79.1%
1lqlA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 30.0 3.47e-01 74.5% 92.3%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 48.0 2.99e-01 100.0% 36.7%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.56 41.0 3.63e-01 96.1% 54.9%
8ciwA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.56 44.0 3.33e-01 90.2% 64.7%
3bg1B01 6.20.50.170 Special › Other non-globular › N-terminal domain of TfIIb › 0.54 34.0 3.50e-01 86.3% 63.3%
2o55A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.54 44.0 2.87e-01 96.1% 33.1%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 36.0 2.84e-01 70.6% 34.7%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 45.0 2.77e-01 100.0% 24.3%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.53 36.0 3.71e-01 90.2% 75.0%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 43.0 3.05e-01 96.1% 29.1%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.53 37.0 3.27e-01 90.2% 48.1%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 30.0 3.00e-01 74.5% 50.0%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.52 35.0 2.79e-01 90.2% 30.5%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 44.0 2.88e-01 98.0% 89.4%
3mzkB01 6.20.50.30 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 33.0 3.62e-01 92.2% 89.5%
2qyvA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 43.0 2.79e-01 100.0% 66.0%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.69e-01 100.0% 51.4%
4q7aA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 39.0 2.65e-01 94.1% 61.7%
1qh5A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 39.0 2.66e-01 100.0% 76.2%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.50 36.0 2.78e-01 76.5% 88.4%
1k8kD02 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 41.0 3.06e-01 92.2% 51.1%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 39.0 2.64e-01 88.2% 25.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3643296 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.62 41.0 3.16e-01 84.3% 29.2%
3580378 2.18.1.0 ↗ beta barrels › OB-fold › OB domain in putative lipoprotein BF3042-related proteins › OB domain in putative lipoprotein BF3042-related proteins 0.61 49.0 4.09e-01 92.2% 81.1%
3936442 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 37.0 3.01e-01 88.2% 32.0%
5018514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 3.41e-01 98.0% 31.1%
3192965 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.59 44.0 2.65e-01 82.4% 34.5%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.78e-01 100.0% 79.1%
3940847 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.57 49.0 3.77e-01 98.0% 43.6%
3462092 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.57 38.0 3.11e-01 82.4% 34.0%
3423399 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.57 39.0 3.19e-01 82.4% 38.9%
3484806 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.56 37.0 3.09e-01 82.4% 36.8%
3198100 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 2.70e-01 98.0% 20.5%
3195026 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 38.0 2.36e-01 72.5% 85.1%
4998507 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 41.0 4.10e-01 98.0% 77.8%
4297945 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.55 36.0 3.60e-01 88.2% 63.6%
None — 0.55 46.0 2.84e-01 100.0% 40.3%
3176388 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.77e-01 98.0% 37.4%
3736902 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.76e-01 98.0% 26.1%
4345436 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.54 36.0 3.28e-01 90.2% 48.0%
3672145 5.1.2.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.54 45.0 3.57e-01 98.0% 83.5%
3196432 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.54 43.0 2.70e-01 100.0% 34.9%
3384591 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 42.0 3.80e-01 92.2% 64.3%
3514864 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 34.0 3.34e-01 88.2% 60.0%
5026348 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.53 35.0 3.19e-01 72.5% 100.0%
3298893 60.1.1.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › SPOC 0.52 37.0 2.84e-01 76.5% 55.2%
3303185 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.52 44.0 3.17e-01 96.1% 43.2%
3289416 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.45e-01 86.3% 51.8%
3999127 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.51 40.0 2.31e-01 100.0% 14.7%
3718225 241.1.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.50 41.0 3.04e-01 92.2% 55.0%
4944829 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.50 33.0 3.45e-01 88.2% 75.6%
3281823 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.50 34.0 2.53e-01 74.5% 24.7%