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NC_055060.1__YP_010084092.1__KMD61_gp11__00032

Bact-Vir

NC_055060.1__YP_010084092.1__KMD61_gp11__00032

Identity

Accession:
NC_055060 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Tectiliviricetes› Kalamavirales› Tectiviridae› Deltatectivirus› Streptomyces_phage_WheeHeim

TaxID: 2500797

Cluster

View cluster (88 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-89
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t30C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.73 61.0 5.98e-01 100.0% 84.2%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.70 48.0 4.40e-01 78.4% 54.9%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.70 57.0 5.50e-01 96.6% 79.6%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 61.0 4.59e-01 100.0% 58.3%
1lnsA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.68 59.0 4.66e-01 97.7% 72.6%
2luwA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.66 53.0 5.15e-01 94.3% 78.2%
2w47A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 57.0 4.99e-01 97.7% 82.2%
4lhsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 57.0 4.77e-01 96.6% 81.9%
7o0eA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 50.0 5.14e-01 97.7% 89.2%
1f35A00 2.60.120.390 Mainly Beta › Sandwich › Jelly Rolls › Olfactory marker 0.64 55.0 4.62e-01 98.9% 82.7%
2y26A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 55.0 4.59e-01 98.9% 79.6%
3clwC01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 46.0 4.50e-01 95.5% 69.0%
3no8A00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.63 54.0 4.57e-01 97.7% 63.1%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.63 55.0 4.81e-01 100.0% 78.6%
1f0lA03 2.60.40.700 Mainly Beta › Sandwich › Immunoglobulin-like › Diphtheria toxin, receptor-binding domain 0.63 54.0 4.60e-01 97.7% 63.0%
4qawH03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 55.0 4.81e-01 98.9% 83.6%
8a28A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 52.0 4.51e-01 95.5% 85.2%
5f7uA06 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 53.0 4.72e-01 96.6% 84.9%
6fzvD01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.61 52.0 4.78e-01 95.5% 72.9%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 46.0 4.66e-01 94.3% 83.1%
3ideA02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.60 52.0 4.54e-01 100.0% 78.3%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.59 52.0 4.75e-01 100.0% 74.4%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 4.25e-01 100.0% 85.8%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 43.0 3.97e-01 100.0% 58.3%
1va9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.39e-01 94.3% 46.7%
8ehtB01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.57 50.0 4.28e-01 100.0% 78.2%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 45.0 4.14e-01 95.5% 67.8%
2wv3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.98e-01 93.2% 76.1%
3u83A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.67e-01 76.1% 81.7%
7esdB01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.97e-01 94.3% 77.2%
4jgjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.95e-01 100.0% 71.6%
7vjvA01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.53 45.0 3.54e-01 100.0% 44.4%
2pn5A01 2.60.40.2950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.92e-01 92.0% 77.4%
5tf0B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.91e-01 87.5% 87.4%
3t1wA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.88e-01 83.0% 77.2%
2w07B01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.51 45.0 4.13e-01 100.0% 77.4%
1dfxA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.51 38.0 3.44e-01 88.6% 57.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3714782 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.77 69.0 5.77e-01 96.6% 78.6%
5013968 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.77 63.0 6.09e-01 94.3% 78.6%
3439681 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.71 60.0 5.89e-01 100.0% 86.3%
5021703 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 55.0 5.38e-01 94.3% 81.1%
4220410 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.67 55.0 5.26e-01 92.0% 78.0%
3988567 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 58.0 5.44e-01 95.5% 80.0%
356877 10.32.1.12 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.66 57.0 4.99e-01 97.7% 82.2%
4979803 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 53.0 5.03e-01 97.7% 74.3%
3617942 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 56.0 4.85e-01 97.7% 66.4%
3214160 12.1.1.110 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › AMPK1_CBM 0.64 53.0 5.42e-01 94.3% 95.3%
3523098 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.64 55.0 4.81e-01 95.5% 65.9%
3891965 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.64 56.0 4.67e-01 98.9% 85.2%
1810618 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.63 53.0 4.67e-01 93.2% 66.4%
3591145 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 53.0 5.00e-01 97.7% 75.5%
3849772 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.63 54.0 4.93e-01 97.7% 70.8%
3619410 10.40.1.1 ↗ beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.63 53.0 4.34e-01 96.6% 57.8%
3414205 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.63 54.0 4.78e-01 97.7% 72.3%
2595135 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 55.0 4.89e-01 100.0% 85.5%
1248331 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.62 46.0 4.48e-01 95.5% 71.9%
5030861 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.62 46.0 4.33e-01 78.4% 63.9%
3831811 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 52.0 4.76e-01 93.2% 75.4%
3897532 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.62 52.0 4.70e-01 96.6% 82.4%
3890321 10.32.1.5 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd 0.62 51.0 4.37e-01 92.0% 79.3%
3968310 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.62 54.0 4.62e-01 98.9% 89.0%
3821517 10.32.1.38 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.62 54.0 4.54e-01 100.0% 85.2%
3663362 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 55.0 4.51e-01 98.9% 80.0%
3282483 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 47.0 4.78e-01 92.0% 84.7%
3994744 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.61 53.0 4.82e-01 96.6% 74.2%
4019681 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 53.0 4.60e-01 97.7% 62.9%
3389203 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.61 52.0 4.51e-01 97.7% 67.6%
3762740 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.61 52.0 4.80e-01 98.9% 75.8%
4973922 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.61 45.0 4.47e-01 79.5% 84.2%
1063834 10.32.1.12 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.61 52.0 4.69e-01 96.6% 84.9%
5061473 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 48.0 4.53e-01 86.4% 78.1%
4932670 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 44.0 4.31e-01 78.4% 80.0%
4979213 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 44.0 4.68e-01 79.5% 93.3%
3941823 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.59 50.0 4.27e-01 96.6% 84.0%
3171063 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 40.0 4.19e-01 95.5% 81.3%
3746613 10.32.1.216 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.59 50.0 4.10e-01 96.6% 83.5%
3296624 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 51.0 4.25e-01 97.7% 59.4%
3483501 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 50.0 4.56e-01 100.0% 81.6%
3672602 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 4.76e-01 95.5% 93.8%
3536586 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.57 49.0 4.44e-01 95.5% 73.3%
3614539 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 47.0 4.45e-01 95.5% 95.5%
3192262 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.56 48.0 3.19e-01 100.0% 82.5%
3271653 12.1.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.56 47.0 4.47e-01 96.6% 90.9%
3241208 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.55 47.0 4.42e-01 97.7% 79.1%
3898179 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.55 46.0 4.29e-01 96.6% 75.7%
3226028 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 46.0 4.32e-01 98.9% 76.5%
5023642 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 3.68e-01 98.9% 67.8%
3927107 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.54 46.0 4.15e-01 96.6% 71.2%
3323193 207.1.1.119 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_13 0.54 47.0 2.92e-01 97.7% 18.4%
3973982 11.1.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M 0.54 41.0 4.05e-01 87.5% 78.9%
3924225 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 4.10e-01 95.5% 69.2%
3233123 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.53 45.0 4.13e-01 98.9% 74.2%
4608994 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 4.02e-01 89.8% 83.5%
3935758 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 42.0 4.12e-01 97.7% 82.1%
3534048 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.52 38.0 3.44e-01 77.3% 71.7%
4927680 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 46.0 4.04e-01 98.9% 72.3%
4954978 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.87e-01 97.7% 71.2%