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YP_010084265.1

Arc-Vir

NC_055116__YP_010084265.1__KM458-gp15__00015

Identity

Accession:
NC_055116 ↗
Protein ID:
YP_010084265.1 ↗
Kingdom:
archaea

Quality

85.9 mean pLDDT

Taxonomy

Portogloboviridae› Alphaportoglobovirus› Sulfolobus_polyhedral_virus_2

TaxID: 2493125

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: rep: IMGVR_UViG_3300025371_000001-3300025371-Ga0209224_100000182__D3-72
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k07A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.73 52.0 3.44e-01 98.4% 18.3%
3le2A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.71 52.0 4.08e-01 77.8% 73.3%
6n36A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.71 50.0 3.34e-01 98.4% 18.1%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.71 52.0 4.01e-01 77.8% 78.6%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 52.0 3.81e-01 77.8% 43.8%
1dxkA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.70 55.0 3.84e-01 100.0% 25.3%
2gzsA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.69 59.0 3.93e-01 96.8% 51.4%
2d5lA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.68 55.0 3.65e-01 90.5% 45.0%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.68 48.0 3.15e-01 76.2% 26.9%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 54.0 3.95e-01 85.7% 40.9%
2e5aA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.67 55.0 4.97e-01 95.2% 95.7%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.66 48.0 3.67e-01 76.2% 54.7%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 57.0 3.53e-01 98.4% 17.5%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 47.0 3.05e-01 77.8% 25.4%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.65 51.0 3.98e-01 87.3% 49.3%
4i14A02 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.64 51.0 4.19e-01 92.1% 75.4%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.64 55.0 4.74e-01 100.0% 61.8%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.63 55.0 4.14e-01 96.8% 41.1%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.63 52.0 4.07e-01 93.7% 54.3%
6u10A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 51.0 3.35e-01 92.1% 28.3%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 52.0 3.97e-01 96.8% 41.8%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 52.0 3.99e-01 96.8% 43.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 3.79e-01 85.7% 58.0%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 42.0 4.03e-01 73.0% 73.0%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 45.0 3.53e-01 82.5% 97.8%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 46.0 3.64e-01 85.7% 89.2%
5wcmA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 47.0 3.15e-01 92.1% 28.5%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 3.40e-01 96.8% 75.5%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 47.0 3.80e-01 98.4% 92.7%
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 47.0 3.67e-01 96.8% 64.9%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.28e-01 73.0% 43.2%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.61e-01 100.0% 38.2%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.56 43.0 4.29e-01 84.1% 81.5%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.56 40.0 4.07e-01 81.0% 79.4%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.55 44.0 3.55e-01 92.1% 83.1%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.49e-01 90.5% 63.0%
6nhsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 40.0 2.79e-01 81.0% 82.0%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.55 39.0 3.56e-01 74.6% 76.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 36.0 3.44e-01 81.0% 57.3%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.54 43.0 3.42e-01 100.0% 39.0%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 41.0 4.26e-01 88.9% 96.5%
2f2hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 48.0 4.03e-01 100.0% 69.7%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.53 47.0 3.64e-01 100.0% 89.5%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 3.22e-01 98.4% 62.2%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 46.0 3.59e-01 100.0% 73.4%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.24e-01 74.6% 60.2%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.31e-01 93.7% 84.6%
2konA00 3.30.160.350 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 3.46e-01 76.2% 93.9%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.52 39.0 3.30e-01 100.0% 46.4%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.40e-01 98.4% 87.6%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.52 38.0 3.29e-01 100.0% 49.0%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 43.0 3.49e-01 93.7% 49.6%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 36.0 3.43e-01 74.6% 70.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4464658 274.1.1.59 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGG 0.75 55.0 4.41e-01 76.2% 48.2%
3364063 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.74 55.0 4.16e-01 77.8% 68.6%
3315173 243.3.1.46 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SWIM 0.73 66.0 5.36e-01 98.4% 54.8%
3241305 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.73 54.0 4.12e-01 77.8% 78.6%
3883246 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.73 54.0 3.86e-01 77.8% 40.6%
4662134 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.71 52.0 4.23e-01 77.8% 50.4%
3700747 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 50.0 4.38e-01 76.2% 92.2%
3583473 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.67 48.0 3.09e-01 76.2% 22.2%
3164017 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.67 48.0 4.28e-01 76.2% 61.1%
3483990 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.67 48.0 3.10e-01 77.8% 26.3%
3627099 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.66 47.0 3.08e-01 76.2% 24.1%
4087511 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 44.0 3.70e-01 71.4% 85.5%
4137393 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.63 45.0 3.45e-01 76.2% 38.7%
3800450 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.62 45.0 2.80e-01 77.8% 20.3%
3273306 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.62 58.0 4.23e-01 100.0% 50.7%
3899390 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 47.0 3.60e-01 84.1% 79.3%
5038444 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 44.0 4.28e-01 77.8% 91.4%
3976580 243.1.1.21 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3828 0.59 43.0 3.30e-01 77.8% 80.4%
3536447 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.58 52.0 3.95e-01 98.4% 60.0%
3999575 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.58 52.0 4.02e-01 98.4% 63.7%
4021350 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.58 48.0 3.39e-01 90.5% 29.1%
3206724 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.57 43.0 3.21e-01 92.1% 30.6%
3941741 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.43e-01 85.7% 54.3%
3510850 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.55 47.0 4.27e-01 100.0% 81.1%
3386946 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.55 45.0 3.58e-01 98.4% 88.6%
3554073 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 42.0 3.32e-01 84.1% 75.4%
5032125 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 43.0 2.98e-01 95.2% 32.3%
3838288 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 3.52e-01 87.3% 58.3%
5052285 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.61e-01 87.3% 73.3%
3818481 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 45.0 3.14e-01 100.0% 68.1%
3927894 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 40.0 3.17e-01 84.1% 74.8%
5038410 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 44.0 2.97e-01 98.4% 39.2%
9393 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.52 40.0 2.71e-01 85.7% 34.1%
3926989 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.81e-01 100.0% 50.7%
3235708 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.51 40.0 3.48e-01 87.3% 67.0%
4085391 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.51 44.0 3.22e-01 98.4% 82.0%