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YP_010084275.1

Arc-Vir

NC_055116__YP_010084275.1__KM458-gp25__00025

Identity

Accession:
NC_055116 ↗
Protein ID:
YP_010084275.1 ↗
Kingdom:
archaea

Quality

53.7 mean pLDDT

Taxonomy

Portogloboviridae› Alphaportoglobovirus› Sulfolobus_polyhedral_virus_2

TaxID: 2493125

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-95
PDB
Domain cluster: rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015566__D4-108_357-367
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b6zA01 2.60.40.3120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 47.0 4.47e-01 81.9% 63.7%
4gaaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.64 46.0 3.59e-01 81.9% 36.3%
3vmnA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 48.0 4.24e-01 81.9% 70.4%
3ciaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.63 44.0 3.56e-01 80.9% 37.5%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 47.0 4.36e-01 83.0% 62.3%
2xq0A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.62 43.0 3.48e-01 81.9% 37.4%
3fbqA02 2.60.40.1640 Mainly Beta › Sandwich › Immunoglobulin-like › Conserved domain protein. 0.60 47.0 4.12e-01 83.0% 87.1%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 46.0 4.63e-01 81.9% 86.0%
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 3.98e-01 71.3% 65.7%
4i0kA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 4.28e-01 79.8% 86.7%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 4.58e-01 81.9% 88.2%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 45.0 4.51e-01 81.9% 88.3%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.58 43.0 3.81e-01 81.9% 53.2%
3hnmA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 44.0 3.68e-01 81.9% 89.2%
4pqqA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 43.0 3.72e-01 83.0% 51.3%
7tzeA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 4.01e-01 78.7% 86.2%
3unpA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 43.0 3.47e-01 83.0% 44.6%
7wm5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 43.0 3.34e-01 98.9% 37.2%
4ofdB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 4.24e-01 81.9% 82.1%
4j3vA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 36.0 3.92e-01 83.0% 81.8%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.89e-01 83.0% 68.5%
1jhjA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 42.0 3.55e-01 83.0% 49.7%
3lpmA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 40.0 3.13e-01 95.7% 34.4%
1apsA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 4.15e-01 85.1% 96.9%
2okmA00 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.50e-01 81.9% 57.5%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.51 42.0 4.25e-01 91.5% 94.5%
3ghmA03 2.60.120.830 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 3.38e-01 80.9% 82.4%
2ip4A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 33.0 3.71e-01 83.0% 93.9%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 3.14e-01 80.9% 45.5%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4970420 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.79 55.0 5.99e-01 72.3% 96.2%
5002657 12.1.1.114 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 0.77 63.0 6.61e-01 88.3% 95.3%
5019984 12.1.1.114 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 0.76 65.0 6.54e-01 91.5% 98.9%
5048248 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.74 61.0 6.45e-01 89.4% 96.5%
5035134 12.1.1.114 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 0.74 64.0 5.83e-01 91.5% 75.0%
4550363 12.1.1.115 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4861 0.66 53.0 5.29e-01 85.1% 88.4%
5071126 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.62 46.0 5.03e-01 91.5% 100.0%
5031980 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.62 47.0 3.77e-01 81.9% 41.1%
3660388 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 46.0 4.69e-01 81.9% 82.2%
3415837 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 47.0 4.61e-01 80.9% 81.0%
2323865 1.1.7.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DNA_pol_B_3 0.61 48.0 5.11e-01 86.2% 98.8%
3818415 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.61 48.0 3.65e-01 84.0% 69.8%
3398996 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 47.0 4.36e-01 83.0% 65.8%
4371063 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.57e-01 81.9% 89.0%
3415501 11.1.1.34 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Reeler 0.60 46.0 4.08e-01 83.0% 72.1%
184732 3313.1.1.1 ↗ a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 0.60 41.0 3.98e-01 71.3% 65.7%
3909299 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.25e-01 83.0% 87.2%
3690842 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.60 44.0 4.68e-01 78.7% 91.3%
5017373 11.4.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF4352 0.59 45.0 4.17e-01 83.0% 84.0%
4391792 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 46.0 4.59e-01 85.1% 91.6%
3940888 10.32.1.6 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.58 44.0 4.02e-01 81.9% 65.4%
2896184 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.58 44.0 3.29e-01 96.8% 31.7%
4076309 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.58 43.0 3.22e-01 95.7% 30.6%
3250648 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.57 43.0 4.31e-01 83.0% 83.0%
4393127 12.1.1.44 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_5_C 0.57 41.0 3.90e-01 80.9% 62.6%
3391588 4182.1.1.5 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › MBF2 0.56 41.0 4.22e-01 80.9% 82.0%
3386329 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.56 43.0 3.29e-01 96.8% 33.8%
4413028 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 42.0 3.26e-01 97.9% 35.3%
3407771 10.32.1.235 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MBF2 0.55 41.0 4.11e-01 80.9% 78.7%
3274257 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.85e-01 80.9% 74.2%
4420565 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.54 42.0 3.24e-01 96.8% 36.3%
None — 0.54 39.0 2.97e-01 95.7% 30.4%
3335717 2003.1.5.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.54 45.0 3.65e-01 95.7% 60.0%
4064859 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.54 40.0 3.03e-01 95.7% 31.9%
3644106 10.1.1.3 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Calreticulin 0.53 37.0 3.27e-01 74.5% 94.8%
772 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.53 41.0 3.85e-01 86.2% 84.9%
3754695 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 38.0 3.52e-01 77.7% 68.0%
3716207 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 46.0 3.21e-01 98.9% 46.7%
3788648 221.17.1.2 ↗ a+b two layers › beta-Grasp › C-terminal wheel domain of Cns1 › C-terminal wheel domain of Cns1 › BCD1 0.52 41.0 3.63e-01 86.2% 65.7%
5051525 2003.1.5.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.52 46.0 3.24e-01 100.0% 40.0%
3838571 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.52 38.0 2.95e-01 98.9% 32.6%
None — 0.51 39.0 2.99e-01 98.9% 33.9%
223801 10.2.1.67 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Spike_JR1 0.51 38.0 3.97e-01 81.9% 90.7%
D2 medium residues 96-259_273-357
PDB