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NC_055710.1__YP_010088708.1__KNT15_gp184__00047

Bact-Vir

NC_055710.1__YP_010088708.1__KNT15_gp184__00047

Identity

Accession:
NC_055710 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Alisovirus› Synechococcus_phage_S-CAM22

TaxID: 1883365

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-152
PDB
Domain cluster: rep: MW960030.1__QWY82978.1__X__00024__D5-103
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hwjA01 3.90.1530.10 Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain 0.71 57.0 5.57e-01 94.8% 78.6%
1tcvA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 38.0 2.94e-01 70.7% 61.3%
5vyqA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.52 42.0 3.69e-01 87.9% 84.2%
3ozbA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.50 39.0 3.15e-01 83.6% 72.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943767 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.77 55.0 6.28e-01 95.7% 100.0%
5049804 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.75 68.0 6.37e-01 97.4% 92.9%
4927766 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.75 50.0 5.69e-01 74.1% 91.8%
5083282 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.75 60.0 6.42e-01 98.3% 98.0%
5081788 876.1.1.4 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 0.72 63.0 6.44e-01 96.6% 97.3%
3946729 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.71 53.0 5.80e-01 90.5% 94.7%
5030163 876.1.1.4 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 0.70 63.0 6.49e-01 97.4% 100.0%
3723395 876.1.1.6 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › PF29418 0.68 62.0 6.15e-01 100.0% 95.0%
3941459 876.1.1.7 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › AIPR 0.68 61.0 5.50e-01 97.4% 83.2%
3701649 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.67 53.0 5.70e-01 91.4% 97.0%
3686504 876.1.1.6 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › PF29418 0.67 55.0 5.77e-01 100.0% 98.1%
3279313 2011.2.1.14 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › NUP 0.55 42.0 3.19e-01 81.9% 74.8%
5040090 2011.1.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 0.52 46.0 3.34e-01 94.8% 81.6%
3817963 2011.2.1.16 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › DUF7894 0.52 43.0 3.48e-01 89.7% 91.1%
4980118 2011.2.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.52 39.0 3.04e-01 81.9% 65.7%
3651076 2011.2.1.16 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › DUF7894 0.51 43.0 3.43e-01 92.2% 86.4%
4443916 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.50 36.0 3.37e-01 100.0% 58.7%
D2 high residues 158-321
PDB
Domain cluster: rep: HQ317383.1__AGN33542.1__SWYG_00030__00030__D178-349
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 26.0 3.44e-01 84.8% 81.9%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.55 28.0 3.43e-01 84.8% 74.8%
4f7nB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 31.0 3.37e-01 87.8% 64.0%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 24.0 3.42e-01 73.2% 89.0%
7uzqK01 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.52 41.0 3.23e-01 83.5% 88.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3931221 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.64 33.0 3.34e-01 73.8% 47.9%
3255346 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.61 33.0 3.66e-01 81.7% 63.8%
5001160 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 32.0 3.59e-01 82.9% 66.2%
3581844 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.52 30.0 3.20e-01 82.3% 60.0%