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NC_055715.1__YP_010089503.1__KNT59_gp245__00222

Bact-Vir

NC_055715.1__YP_010089503.1__KNT59_gp245__00222

Identity

Accession:
NC_055715 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Jiaodavirus› Klebsiella_phage_KPV15

TaxID: 1913572

Cluster

View cluster (33 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-122_203-213
PDB
Domain cluster: rep: KR296690.1__AKJ73996.1__SP36_24__00024__D67-173_211-219
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07068.18 best Gp23 97.2 2.00e-27 96.9% 33.7%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.91 81.0 8.29e-01 91.3% 97.5%
7mh2A01 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.74 53.0 6.09e-01 89.0% 100.0%
2e0zC03 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.73 54.0 6.13e-01 92.1% 100.0%
3dktA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.73 53.0 6.04e-01 92.9% 100.0%
2pk8A00 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.73 52.0 6.05e-01 75.6% 100.0%
1ohgA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.72 57.0 6.29e-01 92.1% 100.0%
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.70 65.0 4.86e-01 100.0% 62.2%
3lhiA00 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 43.0 3.57e-01 83.5% 99.1%
2inbA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 43.0 4.39e-01 84.3% 90.6%
3ceaC02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 38.0 3.31e-01 92.9% 47.6%
3lp5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 45.0 3.63e-01 91.3% 84.0%
3nwpA00 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 3.43e-01 84.3% 97.0%
4v1ap00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 31.0 3.54e-01 70.9% 80.4%
1hyuA04 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 32.0 3.66e-01 74.8% 86.2%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3583655 2485.3.1.5 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.80 76.0 5.46e-01 100.0% 57.8%
4995674 2485.3.1.5 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.77 73.0 5.60e-01 100.0% 67.8%
11367 2485.3.1.6 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › ENCP4 0.73 52.0 6.05e-01 75.6% 100.0%
5042513 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.72 43.0 4.42e-01 80.3% 61.7%
4988094 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.72 68.0 5.27e-01 100.0% 64.3%
4292828 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.72 45.0 5.11e-01 78.7% 83.2%
4994471 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.71 42.0 4.81e-01 79.5% 78.9%
333200 2485.3.1.1 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.70 65.0 4.84e-01 100.0% 62.7%
4815223 2485.3.1.7 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.69 64.0 5.34e-01 99.2% 83.6%
3949155 2485.3.1.11 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.69 64.0 4.95e-01 100.0% 64.9%
5083777 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.68 64.0 4.76e-01 100.0% 54.3%
4884207 2485.3.1.7 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.68 63.0 4.72e-01 99.2% 58.6%
4991535 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.67 63.0 4.92e-01 98.4% 58.4%
4036496 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.67 42.0 4.22e-01 81.9% 61.7%
1877546 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.66 61.0 4.54e-01 99.2% 62.0%
2989356 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.66 61.0 4.57e-01 100.0% 63.3%
4638799 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.65 42.0 4.28e-01 78.7% 65.6%
3480520 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.64 47.0 4.66e-01 80.3% 73.1%
2841509 2485.3.1.12 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.64 58.0 4.40e-01 98.4% 59.2%
4367925 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.64 44.0 3.77e-01 80.3% 44.5%
3738685 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.63 47.0 4.62e-01 80.3% 71.9%
2724409 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.63 58.0 4.51e-01 99.2% 56.6%
5000614 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.63 45.0 4.61e-01 80.3% 76.0%
1125616 2485.1.1.57 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_17 0.63 33.0 3.95e-01 74.0% 76.2%
4648658 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.63 43.0 4.85e-01 75.6% 92.6%
5069284 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.63 52.0 3.92e-01 89.8% 66.8%
4475546 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.62 46.0 4.38e-01 80.3% 66.2%
4621257 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.62 40.0 4.59e-01 77.2% 91.1%
4408770 298.3.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like 0.61 47.0 4.45e-01 80.3% 84.7%
4959577 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.61 41.0 4.90e-01 70.9% 100.0%
5022889 298.2.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like 0.60 44.0 4.01e-01 75.6% 61.8%
5055135 3008.1.1.2 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 0.60 43.0 4.80e-01 77.2% 94.0%
4683009 298.3.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like 0.58 42.0 4.08e-01 74.0% 85.7%
3303037 298.4.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.58 46.0 3.77e-01 83.5% 50.2%
4474455 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.56 43.0 4.00e-01 81.1% 76.8%
4133462 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.56 43.0 4.09e-01 81.1% 79.1%
138238 2003.1.7.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Glucosamine_iso 0.55 43.0 3.58e-01 83.5% 99.1%
3753230 2004.1.1.139 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Torsin 0.55 42.0 3.26e-01 82.7% 36.4%
3408007 2485.1.1.35 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.53 35.0 3.77e-01 73.2% 76.4%
4932571 2004.1.1.194 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 0.52 46.0 3.19e-01 100.0% 51.2%
3243148 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.51 42.0 2.98e-01 88.2% 35.3%
D2 high residues 135-199
PDB