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NC_055716.1__YP_010089598.1__KNT60_gp018__00018

Bact-Vir

NC_055716.1__YP_010089598.1__KNT60_gp018__00018

Identity

Accession:
NC_055716 ↗
Kingdom:
phage

Quality

75.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tegunavirus› Yersinia_phage_fHe-Yen9-01

TaxID: 1965363

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-90
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.64 38.0 4.08e-01 80.3% 68.4%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.70e-01 81.8% 100.0%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.58 51.0 4.55e-01 100.0% 93.6%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.74e-01 92.4% 92.4%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.57e-01 93.9% 89.4%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 48.0 4.47e-01 100.0% 80.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.30e-01 80.3% 94.5%
1wp5A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.54 46.0 3.01e-01 100.0% 27.6%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 40.0 3.10e-01 83.3% 95.3%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.54 47.0 4.17e-01 100.0% 87.5%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 4.41e-01 92.4% 94.1%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 44.0 3.99e-01 100.0% 74.7%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 41.0 4.22e-01 84.8% 96.8%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 45.0 4.13e-01 100.0% 89.9%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 42.0 4.14e-01 92.4% 98.6%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.52 45.0 4.22e-01 100.0% 96.4%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 46.0 3.96e-01 100.0% 87.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 44.0 4.38e-01 95.5% 91.3%
4yn3A02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.51 37.0 3.00e-01 78.8% 96.3%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 42.0 3.45e-01 95.5% 90.8%
5ccbA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.50 39.0 3.86e-01 87.9% 88.9%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.50 39.0 4.02e-01 87.9% 98.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5013637 221.1.3.1 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain › Oxidored_molyb 0.62 52.0 4.01e-01 100.0% 90.9%
5034069 221.1.3.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain 0.59 48.0 3.87e-01 100.0% 96.8%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.57 41.0 4.10e-01 83.3% 71.4%
3872000 109.4.1.872 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_INTS2-bd 0.57 43.0 2.41e-01 81.8% 12.7%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.57 50.0 4.73e-01 100.0% 82.5%
3888998 109.4.1.872 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_INTS2-bd 0.56 43.0 2.33e-01 81.8% 8.6%
4609257 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.56 46.0 3.05e-01 97.0% 43.8%
3730011 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.55 47.0 3.74e-01 97.0% 57.9%
4009311 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.55 45.0 4.59e-01 100.0% 92.3%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.33e-01 100.0% 73.7%
5022295 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.55 42.0 3.26e-01 86.4% 93.9%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.55 45.0 4.30e-01 92.4% 76.2%
4174845 148.1.3.203 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.54 40.0 2.95e-01 78.8% 53.7%
4039738 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.53 40.0 3.85e-01 86.4% 83.7%
3943690 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 39.0 4.13e-01 95.5% 93.1%
5014854 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.52 41.0 2.95e-01 90.9% 95.8%
4982454 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.52 41.0 4.28e-01 89.4% 100.0%
2526350 1.17.1.0 ↗ beta barrels › cradle loop barrel 0.50 42.0 4.11e-01 100.0% 90.8%