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NC_055716.1__YP_010089604.1__KNT60_gp024__00024
Bact-VirNC_055716.1__YP_010089604.1__KNT60_gp024__00024
Identity
- Accession:
- NC_055716 ↗
- Kingdom:
- phage
Quality
92.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Tegunavirus›
Yersinia_phage_fHe-Yen9-01
TaxID: 1965363
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-173
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (5)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13604.13 best | AAA_30 | 82.8 | 3.80e-23 | 98.8% | 72.8% |
| PF05970.21 | PIF1 | 42.7 | 7.10e-11 | 96.5% | 70.0% |
| PF13245.13 | AAA_19 | 85.7 | 4.50e-24 | 80.0% | 97.0% |
| PF04851.22 | ResIII | 32.3 | 1.30e-07 | 70.6% | 42.7% |
| PF24883.3 | NPHP3_N | 30.2 | 6.60e-07 | 63.5% | 42.7% |
D2
high
residues 182-265_390-438
Domain cluster:
rep: OP380601.1__UYD59350.1__HPMBJEAJ_00251__00235__D396-453_577-631
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13538.13 best | UvrD_C_2 | 36.1 | 6.50e-09 | 36.1% | 90.4% |
D3
high
residues 268-381
Domain cluster:
rep: BML_08182015_6_5m_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00154__D281-361
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18343.8 best | SH3_14 | 122.7 | 1.70e-35 | 100.0% | 88.8% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.92 | 88.0 | 8.33e-01 | 100.0% | 87.8% |
| 4dduA07 | 2.60.510.20 | Mainly Beta › Sandwich › EV matrix protein fold › | 0.59 | 39.0 | 4.07e-01 | 98.2% | 71.0% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 50.0 | 3.99e-01 | 98.2% | 89.2% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 25.0 | 3.21e-01 | 75.4% | 76.2% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.53 | 42.0 | 3.33e-01 | 86.0% | 82.9% |
| 4bg7A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.53 | 35.0 | 3.73e-01 | 87.7% | 76.5% |
| 4gxbA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 30.0 | 3.15e-01 | 72.8% | 60.6% |
| 7xlqD01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 36.0 | 3.50e-01 | 71.9% | 96.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1233328 | 4.1.1.116 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_14 | 0.92 | 89.0 | 8.39e-01 | 100.0% | 88.5% |
| 3858981 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.58 | 30.0 | 3.61e-01 | 72.8% | 77.1% |
| 3551896 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.54 | 28.0 | 3.32e-01 | 71.9% | 75.7% |
| 4018741 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 36.0 | 3.06e-01 | 70.2% | 77.0% |
| 4989642 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.53 | 36.0 | 2.68e-01 | 71.1% | 72.0% |
| 3793329 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.52 | 35.0 | 3.86e-01 | 73.7% | 86.7% |
| 3913071 | 220.1.1.52 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C | 0.51 | 34.0 | 3.21e-01 | 71.1% | 55.7% |
| 3502540 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.50 | 35.0 | 3.82e-01 | 100.0% | 88.9% |
| 3279764 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 24.0 | 3.04e-01 | 100.0% | 74.3% |
| 3248736 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.50 | 30.0 | 3.57e-01 | 89.5% | 86.3% |