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NC_055716.1__YP_010089802.1__KNT60_gp222__00222

Bact-Vir

NC_055716.1__YP_010089802.1__KNT60_gp222__00222

Identity

Accession:
NC_055716 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tegunavirus› Yersinia_phage_fHe-Yen9-01

TaxID: 1965363

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-63
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 60.0 5.67e-01 100.0% 66.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 57.0 5.30e-01 100.0% 60.9%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.80 57.0 6.16e-01 100.0% 87.5%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 53.0 5.19e-01 91.1% 67.2%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 58.0 5.74e-01 100.0% 78.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 62.0 6.01e-01 100.0% 80.6%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 57.0 5.27e-01 100.0% 66.2%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 5.23e-01 100.0% 65.3%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 60.0 5.54e-01 100.0% 70.0%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 61.0 6.30e-01 100.0% 94.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.52e-01 100.0% 91.5%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.65 57.0 5.47e-01 100.0% 85.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.60e-01 100.0% 90.0%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 57.0 5.35e-01 100.0% 88.1%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.62 51.0 4.52e-01 91.1% 87.8%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 48.0 4.81e-01 100.0% 87.5%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 55.0 4.69e-01 100.0% 64.0%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 48.0 4.84e-01 92.9% 85.7%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 43.0 4.15e-01 92.9% 66.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 52.0 4.96e-01 100.0% 81.8%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 3.93e-01 92.9% 62.7%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.59 39.0 3.90e-01 96.4% 66.7%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 3.83e-01 92.9% 57.5%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 40.0 3.88e-01 92.9% 63.6%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 47.0 3.23e-01 87.5% 64.4%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 3.79e-01 92.9% 62.7%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 42.0 3.19e-01 85.7% 77.2%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 3.90e-01 92.9% 70.3%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 37.0 2.91e-01 71.4% 63.6%
2p90A01 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.55 46.0 3.07e-01 94.6% 44.2%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.18e-01 89.3% 77.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 46.0 4.31e-01 98.2% 84.5%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 43.0 4.12e-01 91.1% 79.1%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.53 41.0 3.52e-01 92.9% 87.3%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.52 42.0 3.10e-01 96.4% 33.3%
2yrlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.69e-01 91.1% 73.5%
2x3fA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.50 39.0 3.33e-01 89.3% 80.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.90 60.0 5.71e-01 100.0% 60.0%
3231177 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.84 62.0 6.54e-01 100.0% 86.0%
3264879 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 62.0 5.73e-01 100.0% 62.9%
3764432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 60.0 5.69e-01 100.0% 66.2%
4024629 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 54.0 6.24e-01 87.5% 95.0%
3546607 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 58.0 6.14e-01 100.0% 84.0%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 63.0 6.00e-01 100.0% 72.3%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 63.0 6.42e-01 100.0% 85.5%
3941152 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.80 53.0 5.08e-01 92.9% 60.0%
3591224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 60.0 6.31e-01 100.0% 90.0%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.79 62.0 5.90e-01 100.0% 73.4%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.78 60.0 5.94e-01 100.0% 78.0%
3214162 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 50.0 4.90e-01 91.1% 61.7%
3929809 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 50.0 5.74e-01 96.4% 92.5%
4025829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 59.0 6.04e-01 100.0% 83.6%
3247995 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.78 59.0 5.43e-01 100.0% 64.3%
3855038 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.77 59.0 4.17e-01 100.0% 28.7%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 61.0 5.83e-01 100.0% 73.8%
3931602 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 51.0 4.75e-01 92.9% 55.7%
3694693 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.77 56.0 5.30e-01 92.9% 66.2%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.77 59.0 5.07e-01 100.0% 54.1%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.75 63.0 5.95e-01 100.0% 76.9%
5022848 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 60.0 5.88e-01 100.0% 80.0%
3232054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 61.0 4.91e-01 100.0% 49.0%
5043533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 6.17e-01 100.0% 82.8%
3597255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 57.0 4.95e-01 100.0% 55.3%
4961854 4.1.1.492 ↗ beta barrels › SH3 › SH3 › SH3 › PF26460 0.73 68.0 6.06e-01 100.0% 84.0%
3660358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.59e-01 100.0% 78.3%
4943273 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.45e-01 100.0% 73.8%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.72 67.0 5.95e-01 100.0% 73.3%
3927411 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 52.0 5.72e-01 92.9% 95.6%
5052256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 65.0 5.36e-01 100.0% 58.9%
5034724 4.1.1.482 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4314 0.70 60.0 6.08e-01 98.2% 94.5%
4376886 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.69 65.0 5.66e-01 100.0% 81.2%
3691144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 62.0 5.73e-01 100.0% 85.7%
3723834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.68e-01 100.0% 85.7%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.68 55.0 5.41e-01 100.0% 81.7%
3908789 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.68 61.0 3.83e-01 100.0% 26.0%
1821014 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.66 61.0 5.81e-01 100.0% 87.5%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.73e-01 100.0% 70.8%
3709493 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 50.0 3.77e-01 92.9% 35.4%
5053225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.58e-01 100.0% 66.0%
3396594 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.06e-01 100.0% 83.3%
3597364 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 3.35e-01 100.0% 22.9%
3646092 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.61 45.0 3.47e-01 82.1% 33.3%
4945674 2.1.1.252 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2_C 0.59 50.0 4.65e-01 92.9% 77.1%
5075730 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.53 41.0 3.37e-01 89.3% 60.9%
3738506 4325.1.1.4 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DIPSY 0.53 31.0 3.40e-01 73.2% 75.0%
3478243 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.52 42.0 2.84e-01 96.4% 33.2%
4495413 2.8.1.0 ↗ beta barrels › OB-fold › mu transposases-C › mu transposases-C 0.52 40.0 3.80e-01 87.5% 88.6%
4668815 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.52 43.0 3.67e-01 94.6% 76.8%