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NC_055716.1__YP_010089807.1__KNT60_gp227__00227

Bact-Vir

NC_055716.1__YP_010089807.1__KNT60_gp227__00227

Identity

Accession:
NC_055716 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tegunavirus› Yersinia_phage_fHe-Yen9-01

TaxID: 1965363

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-116
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06919.19 best Phage_T4_Gp30_7 174.2 1.00e-51 100.0% 94.1%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 37.0 3.15e-01 85.6% 39.3%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 41.0 3.55e-01 77.5% 65.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.54 42.0 3.92e-01 82.9% 77.7%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 41.0 3.70e-01 91.0% 61.6%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.53 47.0 2.94e-01 100.0% 25.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4055106 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.67 44.0 3.69e-01 86.5% 40.0%
4301684 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.63 44.0 3.73e-01 85.6% 43.7%
4057793 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.62 43.0 3.81e-01 85.6% 48.5%
3240866 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.61 42.0 4.40e-01 70.3% 84.0%
4441857 3347.1.1.6 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › RHS_repeat, DUF6531, TEN_YD-shell 0.59 41.0 2.77e-01 70.3% 23.1%
4600223 616.1.1.33 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › UPF0262 0.59 43.0 4.00e-01 77.5% 100.0%
4216435 3735.1.1.12 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.58 40.0 2.59e-01 70.3% 19.8%
4230707 79.1.1.32 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › RHS_repeat, TEN_YD-shell 0.57 43.0 3.01e-01 78.4% 69.4%
1169937 71.1.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › MucB_RseB 0.57 37.0 3.12e-01 85.6% 38.1%
4960303 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 40.0 4.33e-01 73.0% 86.3%
3163979 71.1.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › MucB_RseB 0.57 36.0 3.08e-01 85.6% 37.9%
5028466 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.57 43.0 4.24e-01 80.2% 76.7%
3979006 77.1.1.15 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › RHS_repeat, DUF6531, TEN_YD-shell 0.54 39.0 2.57e-01 82.0% 17.8%
3707372 7039.1.1.0 ↗ a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM 0.54 38.0 2.90e-01 72.1% 48.1%
4119187 3735.1.1.12 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.54 48.0 2.80e-01 99.1% 39.7%
4570038 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.54 47.0 2.79e-01 99.1% 39.3%
3242245 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.53 29.0 3.64e-01 84.7% 90.8%
3630611 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 35.0 4.06e-01 84.7% 95.0%
5030570 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 36.0 3.21e-01 71.2% 80.6%
4115428 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.51 40.0 3.39e-01 82.0% 72.2%
3226293 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 37.0 2.78e-01 79.3% 31.9%
1169103 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.51 40.0 2.72e-01 82.9% 47.3%
3222321 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 38.0 2.88e-01 77.5% 35.3%
3235531 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.51 39.0 3.05e-01 82.0% 37.9%
3985978 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 35.0 3.80e-01 73.9% 87.8%
3243587 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.50 38.0 2.75e-01 79.3% 35.2%