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NC_055716.1__YP_010089837.1__KNT60_gp257__00257

Bact-Vir

NC_055716.1__YP_010089837.1__KNT60_gp257__00257

Identity

Accession:
NC_055716 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tegunavirus› Yersinia_phage_fHe-Yen9-01

TaxID: 1965363

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-76
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 49.0 5.62e-01 75.4% 100.0%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 5.64e-01 89.9% 96.7%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.32e-01 82.6% 95.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.33e-01 87.0% 87.9%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 4.71e-01 88.4% 68.6%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.67 58.0 5.06e-01 100.0% 69.7%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.66 49.0 4.36e-01 100.0% 54.5%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 5.26e-01 87.0% 89.4%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 4.78e-01 89.9% 72.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 4.93e-01 87.0% 79.5%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 5.12e-01 85.5% 92.6%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.98e-01 87.0% 90.7%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 5.10e-01 85.5% 96.9%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.73e-01 85.5% 92.6%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.84e-01 87.0% 93.5%
6asoH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.66e-01 85.5% 73.5%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 53.0 4.95e-01 100.0% 79.3%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.60e-01 97.1% 79.7%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.61 43.0 3.94e-01 73.9% 97.8%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 48.0 4.53e-01 92.8% 74.7%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.42e-01 88.4% 78.3%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.81e-01 82.6% 68.1%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.85e-01 95.7% 87.8%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.64e-01 78.3% 72.2%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.58 43.0 3.45e-01 81.2% 82.2%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.51e-01 98.6% 98.2%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.56e-01 78.3% 67.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 38.0 4.14e-01 73.9% 94.2%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.62e-01 85.5% 76.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.32e-01 100.0% 83.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 37.0 4.11e-01 73.9% 100.0%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 42.0 3.46e-01 82.6% 87.2%
4g9mB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 44.0 3.48e-01 87.0% 91.6%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.70e-01 78.3% 78.3%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 42.0 2.91e-01 82.6% 39.3%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.36e-01 73.9% 71.0%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.54 45.0 3.74e-01 95.7% 80.5%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.47e-01 88.4% 65.2%
3v0aB04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 41.0 3.26e-01 85.5% 96.8%
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.54 44.0 3.46e-01 92.8% 41.7%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 42.0 3.00e-01 88.4% 56.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.38e-01 81.2% 77.8%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 39.0 3.20e-01 79.7% 92.5%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.63e-01 85.5% 73.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.27e-01 94.2% 96.8%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.44e-01 82.6% 70.6%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 43.0 3.31e-01 100.0% 57.4%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 44.0 3.74e-01 100.0% 56.5%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.52 43.0 3.80e-01 98.6% 65.2%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 43.0 2.91e-01 100.0% 31.8%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 41.0 4.02e-01 89.9% 85.1%
1ygyB03 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.51 37.0 2.97e-01 76.8% 93.5%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 42.0 3.69e-01 98.6% 90.4%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 38.0 3.46e-01 82.6% 81.4%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.50 32.0 3.21e-01 75.4% 61.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4165723 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.69 50.0 5.20e-01 94.2% 83.1%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.67 52.0 5.48e-01 87.0% 95.2%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.67 46.0 4.59e-01 78.3% 70.0%
4646501 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 3.72e-01 82.6% 34.2%
135648 4.1.1.142 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.67 53.0 5.44e-01 87.0% 92.3%
4575051 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.65 53.0 5.03e-01 88.4% 85.0%
4876565 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.64 52.0 4.77e-01 88.4% 78.9%
3942526 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.64 49.0 4.60e-01 82.6% 71.8%
1549365 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.64 51.0 4.79e-01 87.0% 84.3%
4400642 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.64 51.0 4.83e-01 95.7% 72.9%
4256943 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.64 53.0 4.27e-01 100.0% 46.4%
3810686 4.8.1.7 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE 0.63 45.0 4.29e-01 75.4% 77.5%
3601563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 46.0 3.73e-01 81.2% 81.2%
3231177 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.62 43.0 4.80e-01 81.2% 98.0%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.62 51.0 4.46e-01 91.3% 61.9%
3282699 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 43.0 3.70e-01 75.4% 79.1%
3712219 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.61 46.0 4.72e-01 81.2% 86.2%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 45.0 4.18e-01 100.0% 62.2%
3878271 101.1.2.284 ↗ alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.61 46.0 3.59e-01 82.6% 38.7%
3407848 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 46.0 4.18e-01 100.0% 61.1%
5064007 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.60 43.0 3.28e-01 78.3% 32.2%
3609866 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.60 44.0 3.39e-01 81.2% 76.0%
4036705 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.60 44.0 3.63e-01 100.0% 41.5%
933 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.60 45.0 3.81e-01 82.6% 68.1%
1145920 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 39.0 3.74e-01 73.9% 56.6%
3595790 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 3.35e-01 81.2% 76.6%
3354387 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.59 46.0 4.30e-01 85.5% 89.4%
3593363 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 3.55e-01 76.8% 67.5%
3388697 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 49.0 4.70e-01 100.0% 91.3%
4007999 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.56 49.0 4.00e-01 100.0% 79.3%
3484822 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.56 45.0 4.36e-01 97.1% 78.8%
4023915 220.1.1.53 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.55 42.0 3.66e-01 85.5% 82.6%
3812573 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 45.0 3.11e-01 89.9% 85.4%
4259069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.46e-01 100.0% 41.0%
3223650 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.55 40.0 3.24e-01 79.7% 75.2%
5029334 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.55 39.0 3.05e-01 78.3% 38.1%
3266485 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.61e-01 94.2% 81.4%
4043414 5.1.4.311 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NUP159_NUP214 0.54 37.0 2.47e-01 72.5% 37.0%
3267345 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.54 37.0 3.92e-01 73.9% 92.7%
5012286 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.53 36.0 3.81e-01 72.5% 81.7%
5036381 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.53 35.0 3.75e-01 72.5% 81.7%
3629315 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.11e-01 88.4% 67.0%
3594326 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.53 42.0 4.05e-01 88.4% 87.5%
5003460 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.52 36.0 3.44e-01 72.5% 74.1%
4028777 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 40.0 2.41e-01 88.4% 50.2%
3405822 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.52 40.0 3.26e-01 87.0% 64.1%
3590122 4999.1.1.1 ↗ beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX 0.52 37.0 3.82e-01 78.3% 83.1%
3606615 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.50 40.0 3.75e-01 89.9% 85.6%
3827097 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.50 42.0 3.72e-01 98.6% 84.5%