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NC_055717.1__YP_010089983.1__KNT61_gp123__00123
Bact-VirNC_055717.1__YP_010089983.1__KNT61_gp123__00123
Identity
- Accession:
- NC_055717 ↗
- Kingdom:
- phage
Quality
60.7
mean pLDDT
Taxonomy
TaxID: 1965485
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-70
Domain cluster:
representative
D2
medium
residues 116-137_202-260
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qweA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.88 | 82.0 | 5.57e-01 | 100.0% | 46.2% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.87 | 77.0 | 5.37e-01 | 100.0% | 32.6% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.86 | 80.0 | 6.22e-01 | 100.0% | 70.8% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 70.0 | 6.84e-01 | 86.4% | 83.0% |
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.85 | 78.0 | 5.65e-01 | 100.0% | 54.3% |
| 7aalA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.84 | 76.0 | 5.24e-01 | 100.0% | 46.2% |
| 2rd0B00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 75.0 | 6.18e-01 | 97.5% | 60.4% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.83 | 55.0 | 6.35e-01 | 71.6% | 94.8% |
| 7p3rA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.82 | 73.0 | 4.77e-01 | 97.5% | 56.0% |
| 2ficB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.81 | 74.0 | 5.46e-01 | 100.0% | 53.2% |
| 2ch7A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.81 | 75.0 | 4.92e-01 | 100.0% | 26.2% |
| 1qu7A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.81 | 75.0 | 5.29e-01 | 100.0% | 35.7% |
| 3g67A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.80 | 72.0 | 5.21e-01 | 97.5% | 37.6% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.80 | 74.0 | 5.05e-01 | 100.0% | 31.3% |
| 3ofnY00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.80 | 71.0 | 6.32e-01 | 98.8% | 89.6% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.79 | 64.0 | 6.49e-01 | 91.4% | 87.5% |
| 4fzsA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.78 | 69.0 | 5.03e-01 | 97.5% | 37.3% |
| 4wpeA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.77 | 69.0 | 4.69e-01 | 97.5% | 30.5% |
| 1t7sA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.77 | 67.0 | 5.59e-01 | 96.3% | 57.4% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.76 | 53.0 | 4.30e-01 | 88.9% | 40.0% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.76 | 57.0 | 5.62e-01 | 79.0% | 75.3% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.76 | 54.0 | 5.86e-01 | 74.1% | 89.6% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.75 | 51.0 | 4.06e-01 | 71.6% | 36.5% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.74 | 53.0 | 4.35e-01 | 77.8% | 42.1% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 55.0 | 5.16e-01 | 81.5% | 65.3% |
| 6g94A00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.73 | 56.0 | 4.30e-01 | 81.5% | 45.3% |
| 3i2wA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.73 | 64.0 | 4.45e-01 | 97.5% | 32.9% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.72 | 63.0 | 5.29e-01 | 95.1% | 57.9% |
| 3syvA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.72 | 62.0 | 4.43e-01 | 100.0% | 32.2% |
| 1h7cA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 57.0 | 5.29e-01 | 90.1% | 68.9% |
| 2qr4A01 | 1.20.140.70 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain | 0.69 | 50.0 | 4.00e-01 | 76.5% | 41.0% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 47.0 | 4.44e-01 | 72.8% | 100.0% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.66 | 54.0 | 5.22e-01 | 95.1% | 80.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4642325 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.94 | 77.0 | 6.36e-01 | 85.2% | 88.5% |
| 5006401 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.91 | 85.0 | 6.85e-01 | 100.0% | 65.5% |
| 3573786 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.91 | 86.0 | 6.19e-01 | 100.0% | 42.5% |
| 3935140 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.91 | 85.0 | 6.37e-01 | 100.0% | 52.8% |
| 3875112 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.90 | 85.0 | 5.39e-01 | 100.0% | 27.1% |
| 3492576 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.89 | 83.0 | 6.02e-01 | 100.0% | 56.5% |
| 4333962 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.88 | 81.0 | 5.76e-01 | 97.5% | 45.1% |
| 5005097 | 3710.1.1.0 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain | 0.86 | 80.0 | 6.62e-01 | 98.8% | 66.9% |
| 3385717 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.86 | 80.0 | 6.13e-01 | 100.0% | 50.0% |
| 3169381 | 874.1.1.0 ↗ | a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain | 0.85 | 78.0 | 5.70e-01 | 100.0% | 59.0% |
| 4501248 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.84 | 77.0 | 5.93e-01 | 100.0% | 55.9% |
| 5083949 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.83 | 77.0 | 6.49e-01 | 100.0% | 65.4% |
| 3973283 | 325.1.7.27 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › HH_AprE | 0.82 | 67.0 | 4.88e-01 | 85.2% | 62.6% |
| 3275449 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.82 | 67.0 | 5.00e-01 | 100.0% | 37.4% |
| 3973285 | 3755.1.1.28 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › PF25876 | 0.82 | 76.0 | 6.27e-01 | 100.0% | 64.4% |
| 4645599 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.82 | 75.0 | 4.79e-01 | 100.0% | 23.9% |
| 3534459 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.81 | 73.0 | 5.04e-01 | 100.0% | 43.8% |
| 4373346 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.78 | 72.0 | 5.19e-01 | 100.0% | 44.7% |
| 5049284 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.75 | 66.0 | 5.85e-01 | 98.8% | 78.3% |
| 4036645 | 5086.1.1.92 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE | 0.74 | 67.0 | 5.01e-01 | 100.0% | 70.8% |
| 4944765 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.73 | 66.0 | 4.04e-01 | 100.0% | 31.2% |
| 2527147 | 4266.1.1.3 ↗ | alpha bundles › Hyaluronidase domain-like › Hyaluronidase post-catalytic domain-like › Hyaluronidase post-catalytic domain-like › NagJ_C | 0.72 | 51.0 | 4.42e-01 | 74.1% | 48.8% |
| 2555592 | 5069.1.1.3 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I | 0.72 | 53.0 | 5.26e-01 | 85.2% | 75.3% |
| 3361162 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.69 | 60.0 | 5.25e-01 | 100.0% | 73.6% |
| 3615972 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.67 | 59.0 | 4.53e-01 | 98.8% | 72.4% |
D3
medium
residues 138-201
Domain cluster:
representative
CATH (81)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.95 | 91.0 | 7.41e-01 | 100.0% | 60.4% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.94 | 89.0 | 7.89e-01 | 100.0% | 77.9% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.92 | 79.0 | 7.94e-01 | 90.6% | 95.3% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.92 | 87.0 | 7.20e-01 | 100.0% | 63.1% |
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.92 | 85.0 | 6.99e-01 | 100.0% | 62.6% |
| 2cmrA00 | 1.20.58.1860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.92 | 84.0 | 5.75e-01 | 96.9% | 33.9% |
| 2ch7A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.90 | 83.0 | 5.16e-01 | 100.0% | 68.3% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.90 | 66.0 | 7.36e-01 | 87.5% | 100.0% |
| 3g67A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.90 | 82.0 | 5.57e-01 | 100.0% | 33.3% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.90 | 75.0 | 6.87e-01 | 100.0% | 70.4% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.89 | 77.0 | 7.85e-01 | 90.6% | 96.8% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.89 | 81.0 | 7.62e-01 | 100.0% | 88.3% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.89 | 61.0 | 6.40e-01 | 100.0% | 78.0% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.88 | 77.0 | 7.11e-01 | 100.0% | 75.3% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.87 | 76.0 | 5.93e-01 | 95.3% | 46.9% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.87 | 70.0 | 6.80e-01 | 96.9% | 77.5% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.87 | 74.0 | 7.47e-01 | 92.2% | 93.8% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.86 | 70.0 | 7.20e-01 | 90.6% | 91.8% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.86 | 76.0 | 6.47e-01 | 100.0% | 60.8% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.86 | 68.0 | 5.04e-01 | 84.4% | 35.5% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.86 | 69.0 | 7.10e-01 | 92.2% | 91.7% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.86 | 74.0 | 6.17e-01 | 100.0% | 56.5% |
| 3qf7A02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.85 | 67.0 | 6.75e-01 | 100.0% | 84.1% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 69.0 | 7.11e-01 | 87.5% | 93.3% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.85 | 70.0 | 7.33e-01 | 90.6% | 98.3% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.85 | 76.0 | 4.95e-01 | 100.0% | 24.4% |
| 7p3rA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.85 | 75.0 | 4.73e-01 | 100.0% | 20.0% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.84 | 70.0 | 6.50e-01 | 90.6% | 73.1% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.84 | 72.0 | 7.23e-01 | 93.8% | 93.8% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.84 | 74.0 | 6.28e-01 | 100.0% | 60.6% |
| 3t98B00 | 6.10.140.1350 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 74.0 | 6.63e-01 | 100.0% | 70.9% |
| 3nrxA00 | 1.20.58.1520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 76.0 | 6.03e-01 | 100.0% | 52.0% |
| 3hhcC00 | 1.20.1250.60 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda | 0.83 | 65.0 | 4.86e-01 | 84.4% | 35.8% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 74.0 | 5.51e-01 | 100.0% | 40.3% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.83 | 64.0 | 6.41e-01 | 98.4% | 82.8% |
| 2ficB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.83 | 73.0 | 5.12e-01 | 100.0% | 31.8% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 73.0 | 5.90e-01 | 100.0% | 52.5% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 71.0 | 6.33e-01 | 100.0% | 67.8% |
| 1qu7A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.81 | 72.0 | 4.88e-01 | 100.0% | 40.5% |
| 4lunU00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.81 | 74.0 | 4.65e-01 | 100.0% | 22.8% |
| 3ck6C02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.81 | 73.0 | 5.89e-01 | 100.0% | 55.5% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.81 | 69.0 | 6.99e-01 | 93.8% | 100.0% |
| 2v0xA01 | 1.10.287.3160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 71.0 | 5.24e-01 | 100.0% | 46.4% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.80 | 72.0 | 5.95e-01 | 100.0% | 60.7% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.80 | 69.0 | 5.25e-01 | 93.8% | 44.8% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 70.0 | 6.19e-01 | 96.9% | 70.7% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.80 | 72.0 | 5.15e-01 | 100.0% | 37.2% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.80 | 62.0 | 5.68e-01 | 84.4% | 65.9% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.80 | 60.0 | 5.42e-01 | 90.6% | 60.0% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.80 | 71.0 | 5.88e-01 | 100.0% | 59.6% |
| 4nswB01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.80 | 70.0 | 4.68e-01 | 100.0% | 43.8% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.79 | 71.0 | 6.50e-01 | 100.0% | 76.5% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.79 | 64.0 | 5.96e-01 | 87.5% | 79.5% |
| 1w9rA00 | 1.20.58.440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A | 0.79 | 63.0 | 5.14e-01 | 100.0% | 47.1% |
| 2gl2B00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 71.0 | 5.92e-01 | 100.0% | 78.0% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.77 | 67.0 | 5.75e-01 | 96.9% | 62.7% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.77 | 63.0 | 6.06e-01 | 90.6% | 84.9% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 69.0 | 6.68e-01 | 100.0% | 91.5% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.77 | 65.0 | 5.39e-01 | 96.9% | 52.5% |
| 2q5zB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.77 | 65.0 | 5.57e-01 | 90.6% | 60.6% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.76 | 64.0 | 5.67e-01 | 96.9% | 63.3% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.76 | 66.0 | 4.97e-01 | 100.0% | 42.9% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 57.0 | 5.53e-01 | 84.4% | 71.2% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.76 | 67.0 | 5.61e-01 | 100.0% | 59.1% |
| 3qweA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.76 | 67.0 | 4.45e-01 | 100.0% | 46.9% |
| 3pe0A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 66.0 | 5.68e-01 | 98.4% | 65.3% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 67.0 | 5.80e-01 | 100.0% | 70.7% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.75 | 64.0 | 6.17e-01 | 96.9% | 91.8% |
| 1bhaA00 | 1.10.287.170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 61.0 | 6.03e-01 | 90.6% | 85.1% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.73 | 66.0 | 5.47e-01 | 100.0% | 59.6% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.72 | 56.0 | 5.08e-01 | 84.4% | 65.5% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.70 | 54.0 | 5.48e-01 | 90.6% | 90.2% |
| 1kqfC00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.70 | 59.0 | 4.19e-01 | 100.0% | 32.4% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.69 | 59.0 | 5.01e-01 | 98.4% | 84.8% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.69 | 52.0 | 4.44e-01 | 82.8% | 49.5% |
| 1xzpA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.69 | 59.0 | 4.45e-01 | 100.0% | 48.8% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.68 | 56.0 | 5.38e-01 | 100.0% | 80.3% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.67 | 60.0 | 4.95e-01 | 100.0% | 59.5% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.66 | 58.0 | 4.94e-01 | 100.0% | 67.0% |
| 6qumQ00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.65 | 58.0 | 5.57e-01 | 100.0% | 94.6% |
| 1vfiA00 | 1.10.246.100 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 | 0.56 | 41.0 | 3.62e-01 | 78.1% | 77.9% |
ECOD (79)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3708789 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.97 | 93.0 | 7.89e-01 | 100.0% | 67.4% |
| 3471712 | 604.8.1.0 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo | 0.97 | 93.0 | 7.12e-01 | 100.0% | 60.0% |
| 5060432 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.97 | 92.0 | 7.01e-01 | 100.0% | 70.8% |
| 3942242 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.96 | 92.0 | 6.81e-01 | 100.0% | 48.6% |
| 3377064 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.96 | 90.0 | 5.39e-01 | 98.4% | 17.7% |
| 3718629 | 3755.2.1.0 ↗ | alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein | 0.95 | 90.0 | 5.73e-01 | 100.0% | 24.6% |
| 3517330 | 603.2.1.1 ↗ | alpha bundles › STAT-like › STAT › STAT › STAT_alpha | 0.95 | 90.0 | 5.99e-01 | 100.0% | 30.5% |
| 3710276 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.95 | 90.0 | 5.95e-01 | 100.0% | 29.8% |
| 4023594 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.95 | 81.0 | 5.94e-01 | 92.2% | 39.3% |
| 3711643 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.95 | 89.0 | 5.67e-01 | 100.0% | 55.8% |
| 3377278 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.94 | 89.0 | 7.20e-01 | 100.0% | 58.2% |
| 3804036 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.94 | 85.0 | 6.79e-01 | 100.0% | 53.0% |
| 3952630 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.94 | 88.0 | 6.60e-01 | 100.0% | 45.7% |
| 3590473 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.94 | 88.0 | 6.21e-01 | 100.0% | 45.9% |
| 3715005 | 604.8.1.0 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo | 0.94 | 88.0 | 6.32e-01 | 100.0% | 42.5% |
| 4468389 | 5086.1.1.101 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › SH3BP5 | 0.93 | 87.0 | 6.89e-01 | 100.0% | 76.7% |
| 3396625 | 4177.1.1.12 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAM92 | 0.93 | 88.0 | 5.76e-01 | 100.0% | 27.8% |
| 3598168 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.93 | 86.0 | 6.17e-01 | 100.0% | 64.2% |
| 3596258 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.92 | 86.0 | 5.50e-01 | 98.4% | 24.7% |
| 4316383 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.92 | 86.0 | 7.40e-01 | 100.0% | 67.4% |
| 4025271 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.92 | 78.0 | 6.62e-01 | 90.6% | 58.0% |
| 3780286 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.92 | 83.0 | 4.69e-01 | 100.0% | 10.8% |
| 3837413 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.92 | 79.0 | 5.78e-01 | 90.6% | 38.7% |
| 4219808 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.92 | 85.0 | 5.17e-01 | 100.0% | 20.0% |
| 3702347 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.92 | 85.0 | 6.00e-01 | 100.0% | 36.6% |
| 3386594 | 3291.1.1.197 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › MCPsignal | 0.92 | 85.0 | 7.05e-01 | 100.0% | 67.6% |
| 3961148 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.91 | 87.0 | 6.79e-01 | 100.0% | 53.3% |
| 5007101 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.91 | 84.0 | 5.06e-01 | 100.0% | 19.7% |
| 3976215 | 105.2.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C | 0.91 | 84.0 | 6.16e-01 | 100.0% | 41.3% |
| 3624229 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.90 | 84.0 | 5.29e-01 | 100.0% | 22.5% |
| 3944731 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.90 | 84.0 | 6.02e-01 | 100.0% | 38.8% |
| 5010596 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.90 | 84.0 | 5.60e-01 | 100.0% | 29.1% |
| 3249236 | 4207.1.2.93 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › RNA12 | 0.90 | 84.0 | 5.60e-01 | 100.0% | 29.4% |
| 3788311 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.90 | 79.0 | 6.39e-01 | 100.0% | 53.0% |
| 4025355 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.90 | 82.0 | 5.36e-01 | 100.0% | 26.1% |
| 4018124 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.89 | 82.0 | 5.39e-01 | 100.0% | 26.7% |
| 4408647 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.89 | 82.0 | 6.85e-01 | 100.0% | 61.0% |
| 3496957 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.88 | 82.0 | 4.65e-01 | 100.0% | 11.2% |
| 4549103 | 3755.4.1.54 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF30340 | 0.88 | 81.0 | 4.86e-01 | 100.0% | 51.1% |
| 3788539 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.88 | 81.0 | 4.84e-01 | 100.0% | 46.8% |
| 5043437 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.88 | 81.0 | 6.72e-01 | 100.0% | 61.0% |
| 3517735 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.88 | 81.0 | 5.54e-01 | 100.0% | 32.5% |
| 3730449 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.87 | 80.0 | 5.21e-01 | 100.0% | 25.6% |
| 4000107 | 3567.1.1.122 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › BAR | 0.87 | 79.0 | 5.81e-01 | 100.0% | 43.1% |
| 4587769 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.87 | 72.0 | 7.24e-01 | 100.0% | 87.7% |
| 3704099 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.87 | 81.0 | 4.81e-01 | 100.0% | 22.7% |
| 3258825 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.87 | 81.0 | 4.82e-01 | 100.0% | 23.0% |
| 4649114 | 3559.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 | 0.86 | 73.0 | 6.25e-01 | 92.2% | 59.0% |
| 3958574 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.86 | 79.0 | 5.71e-01 | 100.0% | 39.4% |
| 3588519 | 101.1.2.49 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C | 0.86 | 74.0 | 5.36e-01 | 93.8% | 40.6% |
| 3705544 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.85 | 78.0 | 6.18e-01 | 100.0% | 52.0% |
| 3737161 | 3559.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 | 0.85 | 77.0 | 6.39e-01 | 100.0% | 58.2% |
| 3490268 | 148.1.3.13 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 | 0.85 | 78.0 | 4.81e-01 | 100.0% | 19.4% |
| 4946898 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.85 | 79.0 | 7.47e-01 | 100.0% | 85.3% |
| 4042824 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.84 | 77.0 | 7.11e-01 | 100.0% | 81.2% |
| 3252533 | 4177.1.1.8 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 | 0.84 | 76.0 | 5.15e-01 | 100.0% | 29.8% |
| 1879027 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.84 | 74.0 | 4.53e-01 | 100.0% | 18.1% |
| 3741709 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.83 | 73.0 | 4.03e-01 | 95.3% | 7.0% |
| 3577907 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.83 | 74.0 | 4.86e-01 | 100.0% | 25.1% |
| 3855166 | 4177.1.1.12 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAM92 | 0.83 | 74.0 | 4.80e-01 | 100.0% | 24.1% |
| 3719904 | 148.1.3.13 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 | 0.83 | 74.0 | 4.53e-01 | 100.0% | 17.3% |
| 5006936 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.82 | 73.0 | 7.28e-01 | 98.4% | 96.9% |
| 5060491 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.82 | 74.0 | 5.95e-01 | 100.0% | 53.3% |
| 5007124 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.82 | 73.0 | 4.68e-01 | 100.0% | 36.6% |
| 3925257 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.82 | 72.0 | 5.22e-01 | 100.0% | 37.8% |
| 3676480 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.82 | 72.0 | 6.45e-01 | 100.0% | 71.1% |
| 3713350 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.81 | 72.0 | 5.86e-01 | 100.0% | 54.2% |
| 3693258 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.80 | 69.0 | 5.87e-01 | 100.0% | 61.8% |
| 3506760 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.77 | 67.0 | 5.37e-01 | 100.0% | 92.3% |
| 3182497 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.77 | 69.0 | 4.11e-01 | 100.0% | 15.1% |
| 4961961 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.76 | 64.0 | 6.09e-01 | 93.8% | 80.0% |
| 3638634 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.76 | 66.0 | 5.48e-01 | 98.4% | 62.6% |
| 4043617 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.75 | 64.0 | 4.23e-01 | 100.0% | 24.2% |
| 4801882 | 192.1.1.1 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › MCPsignal | 0.74 | 59.0 | 5.99e-01 | 90.6% | 90.6% |
| 3584009 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.74 | 61.0 | 4.14e-01 | 93.8% | 24.5% |
| 4563674 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.73 | 61.0 | 5.96e-01 | 96.9% | 88.6% |
| 4503822 | 3922.1.1.67 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Val_tRNA-synt_C | 0.72 | 62.0 | 6.12e-01 | 100.0% | 94.1% |
| 3757999 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.70 | 59.0 | 3.79e-01 | 93.8% | 98.0% |
| 3494616 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.67 | 56.0 | 5.24e-01 | 100.0% | 75.3% |
D4
medium
residues 500-551
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pqzA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.79 | 54.0 | 3.89e-01 | 71.2% | 99.3% |
| 2o5nA02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.71 | 58.0 | 4.18e-01 | 92.3% | 72.6% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.71 | 59.0 | 4.17e-01 | 92.3% | 72.2% |
| 3witA00 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.69 | 61.0 | 5.71e-01 | 98.1% | 87.5% |
| 3dbxA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.69 | 56.0 | 3.89e-01 | 90.4% | 72.8% |
| 1t7vA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.69 | 56.0 | 3.88e-01 | 90.4% | 74.2% |
| 3l9rA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.69 | 56.0 | 3.90e-01 | 90.4% | 74.3% |
| 3ohsX02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.69 | 56.0 | 3.78e-01 | 94.2% | 59.5% |
| 2q74A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.69 | 57.0 | 4.25e-01 | 92.3% | 52.7% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.66 | 55.0 | 3.81e-01 | 94.2% | 64.7% |
| 1zt4C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.65 | 54.0 | 3.76e-01 | 94.2% | 73.2% |
| 2x3hA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.64 | 51.0 | 3.04e-01 | 96.2% | 11.0% |
| 1q7hA01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.64 | 50.0 | 4.69e-01 | 86.5% | 100.0% |
| 1iq8A03 | 3.10.450.90 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain | 0.62 | 42.0 | 3.85e-01 | 73.1% | 58.1% |
| 4amwA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.62 | 52.0 | 3.30e-01 | 100.0% | 73.3% |
| 4g7nA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.62 | 48.0 | 4.03e-01 | 88.5% | 48.5% |
| 3dddA02 | 3.40.630.90 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.60 | 48.0 | 3.54e-01 | 90.4% | 87.7% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.60 | 43.0 | 3.85e-01 | 76.9% | 54.5% |
| 3q0hB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 41.0 | 3.27e-01 | 71.2% | 35.5% |
| 2zf3C00 | 2.50.20.30 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.58 | 45.0 | 3.25e-01 | 92.3% | 48.4% |
| 3facA00 | 2.170.150.70 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › | 0.58 | 42.0 | 3.39e-01 | 80.8% | 41.3% |
| 1flgA00 | 2.140.10.10 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily | 0.57 | 45.0 | 2.63e-01 | 96.2% | 46.4% |
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 45.0 | 2.89e-01 | 100.0% | 46.4% |
| 1zxuA00 | 2.40.160.200 | Mainly Beta › Beta Barrel › Porin › LURP1-related | 0.54 | 43.0 | 3.11e-01 | 90.4% | 34.0% |
| 1o7dD01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.53 | 42.0 | 2.76e-01 | 92.3% | 76.6% |
| 2pndA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 44.0 | 3.33e-01 | 94.2% | 52.9% |
| 6a97C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.51 | 35.0 | 2.76e-01 | 75.0% | 35.9% |
| 3v9fA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.65e-01 | 98.1% | 38.2% |
| 3d79A01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.51 | 40.0 | 3.64e-01 | 88.5% | 100.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3766391 | 77.1.1.2 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 | 0.77 | 67.0 | 4.76e-01 | 100.0% | 64.4% |
| 3536554 | 77.1.1.2 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 | 0.77 | 67.0 | 5.51e-01 | 100.0% | 77.9% |
| 4348598 | 3894.1.1.6 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Glyco_trans_A_1 | 0.75 | 62.0 | 4.57e-01 | 92.3% | 45.2% |
| 4484870 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.74 | 60.0 | 4.37e-01 | 90.4% | 77.2% |
| 4007747 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.73 | 62.0 | 3.36e-01 | 98.1% | 6.2% |
| 2393263 | 3735.1.1.4 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein | 0.70 | 58.0 | 3.21e-01 | 94.2% | 8.4% |
| 5038696 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.70 | 49.0 | 3.65e-01 | 75.0% | 33.3% |
| 3488078 | 5.1.12.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains | 0.69 | 43.0 | 2.74e-01 | 92.3% | 13.1% |
| 4150297 | 3735.1.1.9 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat+DUF6531 | 0.69 | 59.0 | 3.40e-01 | 96.2% | 13.1% |
| 4928895 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.69 | 59.0 | 3.78e-01 | 100.0% | 22.4% |
| 3979006 | 77.1.1.15 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › RHS_repeat, DUF6531, TEN_YD-shell | 0.68 | 59.0 | 3.45e-01 | 98.1% | 15.7% |
| 5083971 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.68 | 49.0 | 4.02e-01 | 76.9% | 48.4% |
| 4210618 | 3735.1.1.12 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell | 0.67 | 57.0 | 3.32e-01 | 98.1% | 14.3% |
| 3886813 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.66 | 49.0 | 4.14e-01 | 76.9% | 52.9% |
| 5005203 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.66 | 46.0 | 3.96e-01 | 76.9% | 47.5% |
| 3919846 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.66 | 44.0 | 3.43e-01 | 71.2% | 40.0% |
| 4338928 | 233.1.1.6 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 | 0.65 | 47.0 | 3.89e-01 | 76.9% | 50.0% |
| 4927545 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.64 | 45.0 | 4.19e-01 | 75.0% | 62.9% |
| 4422213 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.64 | 46.0 | 3.29e-01 | 76.9% | 29.7% |
| 4979591 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.64 | 47.0 | 4.27e-01 | 78.8% | 64.3% |
| 5054828 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.64 | 45.0 | 3.36e-01 | 76.9% | 32.9% |
| 3912460 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.63 | 43.0 | 3.24e-01 | 71.2% | 29.6% |
| 5024068 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.62 | 49.0 | 4.36e-01 | 86.5% | 96.0% |
| 3229415 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.62 | 49.0 | 4.39e-01 | 88.5% | 68.0% |
| 5045984 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.62 | 50.0 | 4.24e-01 | 88.5% | 83.5% |
| 4975601 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.61 | 44.0 | 4.12e-01 | 76.9% | 69.2% |
| 4577366 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.61 | 44.0 | 2.94e-01 | 76.9% | 21.9% |
| 5049994 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.61 | 46.0 | 4.11e-01 | 82.7% | 97.3% |
| 4165617 | 865.1.1.0 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain | 0.61 | 52.0 | 3.94e-01 | 96.2% | 85.6% |
| 4172782 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.60 | 42.0 | 3.16e-01 | 75.0% | 32.1% |
| 3268037 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 44.0 | 3.16e-01 | 78.8% | 47.7% |
| 3268583 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.60 | 49.0 | 4.20e-01 | 92.3% | 92.9% |
| 3624211 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.60 | 46.0 | 3.25e-01 | 84.6% | 33.3% |
| 4978884 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.60 | 46.0 | 4.15e-01 | 86.5% | 98.7% |
| 142988 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.58 | 45.0 | 3.83e-01 | 88.5% | 85.7% |
| 3924279 | 5.1.3.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N | 0.57 | 46.0 | 2.90e-01 | 100.0% | 51.9% |
| 3583042 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.57 | 48.0 | 3.47e-01 | 92.3% | 35.0% |
| 4931992 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.56 | 46.0 | 4.13e-01 | 92.3% | 96.0% |
| 4946183 | 243.6.1.12 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA | 0.56 | 44.0 | 3.98e-01 | 86.5% | 96.0% |
| 5058991 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.55 | 44.0 | 4.03e-01 | 88.5% | 98.6% |
| 4936682 | 243.6.1.8 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › AF_0587-like_pre-PUA | 0.55 | 46.0 | 3.94e-01 | 94.2% | 80.0% |
| 5080766 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.54 | 42.0 | 3.88e-01 | 86.5% | 98.6% |
| 5003057 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.54 | 42.0 | 3.88e-01 | 86.5% | 100.0% |
| 4969302 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.54 | 43.0 | 3.98e-01 | 90.4% | 97.1% |
| 4988550 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.53 | 41.0 | 3.69e-01 | 86.5% | 94.7% |
| 4974000 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.52 | 40.0 | 3.82e-01 | 86.5% | 100.0% |
D5
medium
residues 720-790
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4by2B00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.76 | 62.0 | 4.71e-01 | 100.0% | 40.0% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.72 | 52.0 | 4.61e-01 | 80.3% | 52.4% |
| 2af5A02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.70 | 62.0 | 5.03e-01 | 100.0% | 52.9% |
| 3d79A01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.65 | 38.0 | 3.78e-01 | 87.3% | 55.4% |
| 2q74A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.63 | 54.0 | 4.51e-01 | 98.6% | 72.1% |
| 3l9rA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.61 | 48.0 | 3.64e-01 | 87.3% | 76.6% |
| 1dp4C02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 45.0 | 3.33e-01 | 84.5% | 35.3% |
| 4eyyQ02 | 3.20.170.50 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Dot/Icm secretion system IcmQ, C-terminal domain | 0.57 | 40.0 | 3.46e-01 | 74.6% | 100.0% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.56 | 48.0 | 3.69e-01 | 98.6% | 48.6% |
| 2jkbA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 50.0 | 3.67e-01 | 100.0% | 63.0% |
| 1yrtA02 | 3.90.1760.10 | Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain | 0.56 | 39.0 | 3.16e-01 | 95.8% | 35.4% |
| 8aimG01 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.56 | 41.0 | 4.00e-01 | 80.3% | 80.2% |
| 4fwwA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 48.0 | 2.93e-01 | 98.6% | 47.1% |
| 5c5cA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 40.0 | 3.15e-01 | 78.9% | 98.2% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.54 | 47.0 | 3.49e-01 | 100.0% | 38.5% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.53 | 45.0 | 3.67e-01 | 100.0% | 60.3% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 44.0 | 2.94e-01 | 100.0% | 38.1% |
| 3f2bA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 39.0 | 3.57e-01 | 81.7% | 75.0% |
| 3ohsX02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 42.0 | 3.18e-01 | 100.0% | 35.2% |
| 3mf1B00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 43.0 | 3.00e-01 | 98.6% | 58.2% |
| 3uqcB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 35.0 | 3.24e-01 | 71.8% | 88.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928895 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.76 | 54.0 | 3.55e-01 | 74.6% | 22.8% |
| 4927064 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.73 | 53.0 | 3.89e-01 | 74.6% | 44.6% |
| 356532 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.73 | 65.0 | 4.56e-01 | 100.0% | 33.2% |
| 4002261 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.72 | 45.0 | 2.67e-01 | 70.4% | 8.5% |
| 3728626 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.71 | 64.0 | 5.35e-01 | 100.0% | 64.2% |
| 3766391 | 77.1.1.2 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 | 0.69 | 62.0 | 4.76e-01 | 100.0% | 45.0% |
| 3536554 | 77.1.1.2 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 | 0.69 | 62.0 | 5.62e-01 | 100.0% | 75.8% |
| 3979006 | 77.1.1.15 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › RHS_repeat, DUF6531, TEN_YD-shell | 0.66 | 59.0 | 3.54e-01 | 98.6% | 18.1% |
| 3237193 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.65 | 57.0 | 3.20e-01 | 100.0% | 8.4% |
| 3516546 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.63 | 47.0 | 3.49e-01 | 80.3% | 95.8% |
| 3703650 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.63 | 57.0 | 5.59e-01 | 98.6% | 97.3% |
| 4342106 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 47.0 | 3.03e-01 | 85.9% | 23.3% |
| 3856612 | 319.1.1.9 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DPCD | 0.59 | 53.0 | 3.90e-01 | 100.0% | 43.8% |
| 5033931 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 45.0 | 2.98e-01 | 85.9% | 27.0% |
| 4012738 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.58 | 42.0 | 3.48e-01 | 98.6% | 40.7% |
| 4083083 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 46.0 | 3.01e-01 | 85.9% | 26.0% |
| 3613171 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 44.0 | 3.41e-01 | 94.4% | 45.3% |
| 3425673 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.55 | 33.0 | 3.84e-01 | 74.6% | 86.0% |
| 3499456 | 5.1.7.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 | 0.55 | 45.0 | 2.78e-01 | 95.8% | 30.1% |
| 3273846 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 45.0 | 3.04e-01 | 95.8% | 45.7% |
| 3615642 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.53 | 37.0 | 3.87e-01 | 71.8% | 86.2% |
| 3470076 | 861.1.1.0 ↗ | a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein | 0.53 | 41.0 | 3.35e-01 | 85.9% | 97.9% |
| 3188230 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 44.0 | 2.99e-01 | 100.0% | 34.1% |
| 3906360 | 5.1.3.117 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 | 0.52 | 40.0 | 2.74e-01 | 91.5% | 52.0% |
| 3812754 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.52 | 40.0 | 2.97e-01 | 91.5% | 50.4% |
| 3740916 | 1013.1.1.1 ↗ | beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › DUF3337 | 0.51 | 39.0 | 2.87e-01 | 80.3% | 63.9% |
| 143915 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.51 | 39.0 | 2.67e-01 | 93.0% | 34.3% |
| 5070453 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 37.0 | 3.40e-01 | 80.3% | 73.0% |
| 3412753 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 42.0 | 2.70e-01 | 95.8% | 53.9% |
D6
medium
residues 1025-1073