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NC_055721.1__YP_010090733.1__KNT65_gp038__00038

Bact-Vir

NC_055721.1__YP_010090733.1__KNT65_gp038__00038

Identity

Accession:
NC_055721 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 52-114
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01817.27 best CM_2 27.9 3.20e-06 68.2% 48.8%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ybzA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.95 86.0 8.00e-01 96.8% 78.9%
2d8dB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.94 85.0 7.59e-01 95.2% 83.1%
3rmiA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.94 88.0 7.20e-01 100.0% 69.5%
1ecmB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.93 87.0 7.40e-01 100.0% 76.8%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.92 85.0 6.06e-01 100.0% 44.5%
6cnzF00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.91 85.0 6.13e-01 100.0% 46.2%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.90 83.0 6.05e-01 100.0% 47.1%
5ts9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.88 80.0 5.81e-01 100.0% 45.3%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.81 72.0 6.09e-01 100.0% 68.3%
2vklA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.80 71.0 6.61e-01 98.4% 81.8%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.76 60.0 5.03e-01 88.9% 94.6%
1vw4T01 6.10.330.20 Special › Helix non-globular › Monooxygenase › 0.71 42.0 3.46e-01 88.9% 33.9%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 61.0 5.52e-01 100.0% 93.1%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.69 54.0 4.68e-01 85.7% 80.6%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.67 55.0 4.53e-01 92.1% 84.6%
4gbjC02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.66 58.0 4.57e-01 100.0% 85.9%
3eujB00 1.10.225.40 Mainly Alpha › Orthogonal Bundle › NK-Lysin › MukF, C-terminal domain 0.66 55.0 5.00e-01 96.8% 96.7%
3vkgA15 1.10.8.1220 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 47.0 4.12e-01 76.2% 95.7%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.65 53.0 4.49e-01 90.5% 59.4%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.64 55.0 3.92e-01 93.7% 90.8%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.64 53.0 3.58e-01 96.8% 59.5%
3on3B00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.63 54.0 3.96e-01 100.0% 34.9%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.63 43.0 3.86e-01 71.4% 67.1%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.62 41.0 4.07e-01 77.8% 66.2%
2oyoA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.61 51.0 4.22e-01 98.4% 87.2%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 48.0 4.84e-01 92.1% 85.7%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.59 41.0 4.10e-01 71.4% 92.2%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 48.0 4.60e-01 92.1% 82.4%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.59 50.0 4.60e-01 96.8% 89.2%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.59 45.0 3.69e-01 92.1% 46.8%
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 49.0 4.59e-01 92.1% 77.9%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 47.0 3.87e-01 92.1% 73.8%
2oyyA00 6.10.80.10 Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) 0.57 41.0 3.99e-01 76.2% 93.0%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.57 40.0 3.79e-01 76.2% 61.0%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 41.0 4.26e-01 93.7% 81.4%
2l6jA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 49.0 4.15e-01 100.0% 81.1%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.56 49.0 4.03e-01 100.0% 82.4%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.56 44.0 4.55e-01 96.8% 90.2%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.56 43.0 3.85e-01 84.1% 60.5%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 47.0 4.56e-01 96.8% 86.3%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.55 46.0 3.73e-01 90.5% 63.2%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 42.0 3.85e-01 82.5% 67.9%
1ax8A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 43.0 3.36e-01 85.7% 94.6%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 4.01e-01 82.5% 83.3%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.52 48.0 3.74e-01 100.0% 85.0%
2jvnA00 3.90.640.80 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.51 39.0 3.20e-01 85.7% 94.4%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 39.0 3.45e-01 90.5% 93.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075474 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.96 92.0 8.30e-01 100.0% 91.3%
4134991 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.96 91.0 7.55e-01 100.0% 73.0%
4296658 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.95 89.0 7.50e-01 100.0% 74.5%
3981839 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.95 89.0 7.58e-01 100.0% 76.8%
4948274 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.94 89.0 8.28e-01 100.0% 97.3%
4936934 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.94 89.0 7.53e-01 100.0% 76.8%
4521190 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.93 87.0 7.69e-01 98.4% 88.2%
3589699 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.93 84.0 7.69e-01 96.8% 87.5%
4932440 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.93 87.0 7.71e-01 100.0% 85.9%
5066382 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.92 86.0 7.50e-01 100.0% 81.1%
4008532 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.92 86.0 7.66e-01 100.0% 85.9%
4948961 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.92 85.0 7.61e-01 100.0% 85.9%
5011971 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.92 82.0 7.46e-01 95.2% 87.5%
5074758 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.92 82.0 7.45e-01 95.2% 87.5%
4934951 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.92 81.0 7.10e-01 95.2% 77.8%
4957352 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.91 82.0 7.52e-01 96.8% 88.7%
5026124 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.91 83.0 8.21e-01 98.4% 93.8%
4964930 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.91 81.0 7.28e-01 96.8% 83.5%
4055 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.91 83.0 5.99e-01 100.0% 44.2%
3603891 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.91 84.0 7.22e-01 100.0% 77.7%
1884774 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.90 82.0 7.28e-01 98.4% 80.5%
5008279 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.89 80.0 6.88e-01 96.8% 71.6%
4953325 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.89 82.0 7.07e-01 100.0% 76.8%
4936463 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.86 79.0 6.81e-01 100.0% 76.8%
2097520 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.85 76.0 6.83e-01 96.8% 76.2%
3754639 150.5.1.106 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C 0.76 47.0 4.20e-01 92.1% 47.1%
3708119 3285.1.1.1 alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain › ALIX_LYPXL_bnd 0.75 52.0 3.16e-01 71.4% 12.8%
4606236 192.7.1.3 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.70 59.0 5.25e-01 92.1% 80.0%
4322551 604.23.1.0 alpha bundles › Spectrin repeat-like › Sbi complement-binding domain › Sbi complement-binding domain 0.69 47.0 4.99e-01 85.7% 81.8%
3825757 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.67 58.0 5.79e-01 98.4% 92.3%
3292409 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.66 56.0 5.75e-01 96.8% 96.7%
3719307 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.64 46.0 3.18e-01 76.2% 33.0%
3407482 102.1.1.114 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF26701 0.64 53.0 5.27e-01 92.1% 89.2%
3224585 603.1.1.99 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.63 53.0 4.40e-01 92.1% 72.7%
4423577 192.7.1.3 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.63 54.0 4.82e-01 96.8% 78.9%
3715580 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 51.0 4.71e-01 100.0% 70.6%
4412437 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.61 53.0 4.69e-01 100.0% 66.7%
3783077 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 46.0 3.28e-01 88.9% 25.7%
4337254 3755.4.1.79 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › eIF3h_C 0.60 45.0 3.62e-01 77.8% 43.5%
3244407 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.60 48.0 4.98e-01 96.8% 91.7%
4563674 192.7.1.4 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C 0.60 43.0 4.19e-01 76.2% 100.0%
3311061 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 41.0 2.85e-01 93.7% 19.6%
1806460 604.1.1.8 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SbsC_spectrin-like 0.60 48.0 4.86e-01 92.1% 87.3%
3387484 375.1.9.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.58 44.0 3.97e-01 85.7% 60.0%
4387824 192.7.1.4 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C 0.58 43.0 4.13e-01 77.8% 88.6%
3735607 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.57 44.0 4.07e-01 84.1% 65.0%
4383676 3922.1.1.67 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Val_tRNA-synt_C 0.57 41.0 4.00e-01 76.2% 94.3%
3385045 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.55 43.0 3.33e-01 87.3% 40.0%
3456188 109.7.1.10 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › WAV3_C 0.55 47.0 4.45e-01 100.0% 78.7%
5059135 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.55 46.0 4.41e-01 88.9% 81.4%
3494616 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.55 42.0 3.79e-01 82.5% 83.5%
3510680 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.53 43.0 4.19e-01 100.0% 77.1%
4420750 192.7.1.4 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C 0.53 45.0 4.33e-01 92.1% 81.4%
3391014 101.1.2.590 alpha arrays › HTH › HTH › winged helix domain › CDK5RAP3 0.53 42.0 3.09e-01 92.1% 32.7%
5048862 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 41.0 2.59e-01 87.3% 18.1%
4995305 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.52 46.0 4.03e-01 100.0% 90.5%
4956279 633.13.1.1 alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB 0.51 45.0 3.47e-01 96.8% 65.0%
5062156 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 41.0 4.43e-01 90.5% 100.0%