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NC_055721.1__YP_010090762.1__KNT65_gp067__00067

Bact-Vir

NC_055721.1__YP_010090762.1__KNT65_gp067__00067

Identity

Accession:
NC_055721 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Kagamiyamavirus› Escherichia_phage_EcS1

TaxID: 2083276

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-85
PDB
Domain cluster: rep: OQ331036.1__WCZ66216.1__X__00052__D4-76
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.70 52.0 3.98e-01 77.6% 37.0%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.69 52.0 4.00e-01 81.6% 84.5%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.67 59.0 5.33e-01 100.0% 72.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.66 55.0 4.09e-01 94.7% 36.2%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.66 54.0 5.39e-01 88.2% 96.2%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.66 46.0 4.42e-01 72.4% 89.4%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 54.0 5.05e-01 100.0% 88.2%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 4.04e-01 100.0% 66.7%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 53.0 4.57e-01 100.0% 80.2%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 52.0 4.17e-01 100.0% 61.3%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.58 39.0 4.04e-01 94.7% 74.6%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 50.0 4.36e-01 100.0% 99.2%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.58 52.0 4.30e-01 100.0% 88.8%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 51.0 4.62e-01 100.0% 84.5%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 49.0 3.91e-01 100.0% 89.0%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.40e-01 100.0% 82.6%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.02e-01 100.0% 54.2%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 50.0 4.45e-01 100.0% 77.1%
1zsqA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 50.0 4.55e-01 100.0% 93.1%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.27e-01 84.2% 70.3%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 49.0 4.47e-01 100.0% 88.3%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 49.0 4.74e-01 100.0% 90.7%
5ocrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 2.87e-01 82.9% 50.7%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.17e-01 84.2% 62.6%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 49.0 4.50e-01 100.0% 85.0%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.20e-01 100.0% 86.2%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.10e-01 100.0% 83.2%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 2.84e-01 84.2% 49.8%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.53 44.0 3.68e-01 94.7% 79.0%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 35.0 3.03e-01 94.7% 41.6%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.53 45.0 3.54e-01 97.4% 78.0%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 3.96e-01 100.0% 74.0%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 43.0 4.15e-01 94.7% 98.9%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 4.10e-01 100.0% 81.4%
1oq1B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.04e-01 88.2% 68.5%
5cmlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 2.98e-01 92.1% 36.7%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.54e-01 100.0% 82.7%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3468148 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 47.0 3.44e-01 93.4% 26.7%
2123017 295.1.1.10 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PnpCD_PnpD_N 0.69 62.0 4.83e-01 100.0% 64.6%
3230955 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 46.0 3.14e-01 98.7% 21.2%
3244743 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 45.0 3.56e-01 98.7% 36.0%
3470395 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 46.0 3.18e-01 98.7% 24.8%
3418904 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.63 55.0 5.08e-01 100.0% 76.0%
3485620 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 42.0 2.75e-01 94.7% 15.2%
3416385 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.62 40.0 3.01e-01 93.4% 25.6%
5028466 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.62 51.0 4.38e-01 90.8% 96.7%
3255034 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 55.0 4.55e-01 100.0% 62.2%
3737804 220.1.1.121 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.61 55.0 4.93e-01 100.0% 81.0%
3740081 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.61 49.0 4.36e-01 88.2% 82.7%
3514693 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 54.0 4.60e-01 100.0% 78.4%
4589583 2008.1.1.191 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.60 52.0 4.03e-01 97.4% 72.8%
4674129 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 54.0 4.85e-01 100.0% 81.0%
3491449 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.60 53.0 3.97e-01 100.0% 82.6%
3240647 3794.1.1.3 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.59 49.0 4.09e-01 88.2% 63.2%
3628107 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 53.0 4.30e-01 100.0% 73.1%
3890410 11.2.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4550 0.59 52.0 4.08e-01 97.4% 77.5%
4100425 11.1.4.90 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4550 0.59 51.0 4.22e-01 93.4% 76.2%
3250619 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 53.0 4.71e-01 100.0% 90.0%
5016314 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.59 53.0 4.24e-01 100.0% 74.0%
3924612 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 53.0 4.38e-01 100.0% 60.0%
3609378 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 53.0 4.96e-01 100.0% 95.8%
3405822 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.59 53.0 4.27e-01 100.0% 67.6%
4024877 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 53.0 4.25e-01 100.0% 86.9%
3482448 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.59 46.0 3.48e-01 84.2% 62.9%
3219161 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.58 52.0 4.63e-01 100.0% 83.6%
3932677 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 39.0 3.20e-01 98.7% 35.6%
3249381 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 4.03e-01 100.0% 71.5%
4522783 101.1.2.715 ↗ alpha arrays › HTH › HTH › winged helix domain › CheF-arch 0.58 52.0 3.53e-01 100.0% 33.6%
3743890 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 4.17e-01 100.0% 59.3%
4977715 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 52.0 4.50e-01 100.0% 88.7%
3263954 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 4.30e-01 100.0% 72.3%
4026264 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 52.0 4.11e-01 100.0% 61.3%
3870514 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.57 49.0 4.38e-01 100.0% 73.0%
3905525 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 4.34e-01 100.0% 73.3%
3789432 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.03e-01 97.4% 32.8%
3704202 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 41.0 3.29e-01 98.7% 36.9%
3938368 220.1.1.156 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF30805 0.56 50.0 4.37e-01 100.0% 81.7%
3593635 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.41e-01 100.0% 85.5%
3920028 220.1.1.156 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF30805 0.56 50.0 4.32e-01 100.0% 90.7%
3270836 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 50.0 4.35e-01 100.0% 73.0%
3777215 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.52e-01 100.0% 89.0%
3917637 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 50.0 4.00e-01 100.0% 62.0%
3173029 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 50.0 3.73e-01 100.0% 46.8%
3515688 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.27e-01 100.0% 92.5%
3251857 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 50.0 4.11e-01 100.0% 63.7%
3624733 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 44.0 3.46e-01 84.2% 80.7%
3175878 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 50.0 3.95e-01 100.0% 54.8%
4988664 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 4.79e-01 93.4% 94.7%
3833943 220.1.1.128 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SPT16 0.55 48.0 3.75e-01 100.0% 74.9%
3509508 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.55 49.0 4.60e-01 100.0% 89.5%
3759836 220.1.1.156 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF30805 0.55 48.0 4.06e-01 100.0% 89.2%
4934385 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.55 38.0 2.91e-01 73.7% 67.9%
5067503 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.54 47.0 4.07e-01 100.0% 85.6%
3707372 7039.1.1.0 ↗ a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM 0.54 45.0 3.09e-01 90.8% 84.6%
5066347 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 40.0 3.28e-01 81.6% 88.0%
3235531 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.52 41.0 2.92e-01 85.5% 47.5%
5015118 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.51 44.0 3.89e-01 100.0% 89.6%
3217981 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.50 43.0 3.41e-01 97.4% 47.6%
5030570 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.50 43.0 3.43e-01 98.7% 78.2%
3717837 633.23.1.23 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.50 45.0 3.37e-01 98.7% 65.9%