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NC_055722.1__YP_010090999.1__KNT66_gp09__00009

Bact-Vir

NC_055722.1__YP_010090999.1__KNT66_gp09__00009

Identity

Accession:
NC_055722 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-110
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.64 38.0 3.22e-01 96.1% 37.4%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.63 38.0 3.28e-01 96.1% 40.0%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 43.0 4.47e-01 97.1% 86.2%
2keyA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.54 36.0 3.57e-01 100.0% 62.5%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.54 27.0 3.34e-01 75.7% 76.6%
1li5A02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.52 32.0 3.43e-01 99.0% 71.3%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.92e-01 85.4% 76.6%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.51 35.0 2.46e-01 70.9% 55.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5001690 3276.1.1.0 alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor 0.72 42.0 4.98e-01 76.7% 85.7%
5032233 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 38.0 3.72e-01 93.2% 53.0%
5005257 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.55 44.0 3.68e-01 84.5% 84.1%
None 0.54 44.0 3.04e-01 87.4% 71.3%
4991248 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 37.0 3.05e-01 72.8% 66.3%
3803894 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.51 30.0 3.38e-01 96.1% 77.3%