←Back to structures

NC_055727.1__YP_010092037.1__KNT71_gp203__00143

Bact-Vir

NC_055727.1__YP_010092037.1__KNT71_gp203__00143

Identity

Accession:
NC_055727 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Bragavirus› Proteus_phage_PM2

TaxID: 2025809

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-114
PDB
Domain cluster: rep: NC_031020.1__YP_009280033.1__BI036_gp219__00176__D24-82
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.64 53.0 5.20e-01 97.3% 83.1%
2dkhA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.64 39.0 3.46e-01 97.3% 40.4%
2m1cA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 55.0 4.83e-01 100.0% 78.8%
2fz0A00 3.30.450.230 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Vacuolar R-SNARE Nyv1, longin domain 0.61 53.0 4.31e-01 100.0% 61.7%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 53.0 4.31e-01 100.0% 55.2%
3el6A00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.60 42.0 2.90e-01 73.3% 80.4%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 50.0 4.30e-01 97.3% 67.7%
5ereA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 50.0 4.28e-01 98.7% 68.0%
1mwsA04 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 50.0 3.35e-01 100.0% 86.1%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 50.0 4.19e-01 100.0% 59.3%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 46.0 4.55e-01 98.7% 85.0%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 42.0 3.15e-01 78.7% 83.9%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 39.0 2.66e-01 98.7% 20.5%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 47.0 4.42e-01 100.0% 89.0%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 48.0 4.23e-01 100.0% 68.6%
2p4pA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 46.0 4.52e-01 98.7% 88.1%
2nqwA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 46.0 4.42e-01 98.7% 90.8%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 46.0 4.12e-01 100.0% 75.7%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.18e-01 98.7% 81.5%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 42.0 3.49e-01 88.0% 77.2%
2r0cA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.53 35.0 2.97e-01 97.3% 37.7%
1q1gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 35.0 2.42e-01 90.7% 21.0%
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.53 38.0 3.87e-01 100.0% 81.9%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.93e-01 97.3% 98.6%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 34.0 3.74e-01 97.3% 91.2%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.51 40.0 3.15e-01 89.3% 83.2%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.50 36.0 3.72e-01 100.0% 82.2%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
6883 223.5.1.1 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like › YNR034W-A-like 0.65 54.0 4.99e-01 97.3% 70.4%
4591697 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.64 57.0 4.82e-01 100.0% 80.0%
4971897 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 57.0 5.30e-01 100.0% 88.4%
4977284 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.62 43.0 3.51e-01 100.0% 38.6%
3698579 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.62 53.0 4.78e-01 100.0% 80.9%
5065158 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 53.0 4.32e-01 100.0% 56.0%
5044703 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 4.52e-01 100.0% 60.8%
5079486 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 53.0 4.38e-01 100.0% 58.6%
3639196 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.60 35.0 4.15e-01 94.7% 87.8%
185264 222.1.1.19 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FlgA_HD-like 0.60 35.0 3.71e-01 97.3% 63.8%
4004520 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.60 51.0 4.36e-01 97.3% 71.2%
4467065 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 52.0 3.67e-01 100.0% 30.0%
4392996 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.59 47.0 3.01e-01 90.7% 46.6%
2069009 304.107.1.1 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.58 43.0 3.57e-01 96.0% 42.6%
4944225 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 50.0 4.20e-01 100.0% 59.3%
3693368 1205.2.1.1 ↗ a+b two layers › C-terminal domain of CdiA toxin › C-terminal domain of P. aeruginosa CdiA › C-terminal domain of P. aeruginosa CdiA › PF31217 0.58 45.0 3.97e-01 86.7% 80.9%
1199755 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.57 39.0 2.67e-01 98.7% 20.9%
4994897 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 49.0 4.13e-01 100.0% 65.9%
5049089 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 48.0 4.18e-01 100.0% 63.3%
3718669 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 3.03e-01 97.3% 89.2%
1016923 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.55 46.0 4.43e-01 98.7% 84.4%
4135753 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 46.0 3.08e-01 100.0% 25.8%
3240591 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.55 46.0 3.33e-01 100.0% 38.4%
4011464 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 48.0 3.09e-01 97.3% 91.5%
5054338 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 45.0 2.96e-01 100.0% 20.7%
4340002 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.54 40.0 4.08e-01 100.0% 85.7%
5077814 2011.2.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.54 36.0 2.46e-01 90.7% 21.3%
3839094 234.3.1.6 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › DUF3519, PBECR3 0.54 43.0 3.37e-01 92.0% 51.1%
4180524 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 45.0 3.06e-01 100.0% 25.6%
3966741 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 43.0 2.93e-01 100.0% 26.8%
4029825 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.52 41.0 4.07e-01 94.7% 98.8%
2388260 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 42.0 3.46e-01 100.0% 55.9%