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NC_055727.1__YP_010092122.1__KNT71_gp118__00228

Bact-Vir

NC_055727.1__YP_010092122.1__KNT71_gp118__00228

Identity

Accession:
NC_055727 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Bragavirus› Proteus_phage_PM2

TaxID: 2025809

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u3qB00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.66 46.0 4.06e-01 73.8% 93.9%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.60 42.0 3.98e-01 73.8% 97.5%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.55 47.0 4.48e-01 98.5% 98.7%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.55 29.0 3.42e-01 73.8% 75.6%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.55 40.0 3.65e-01 81.5% 89.4%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.54 41.0 3.65e-01 83.1% 92.8%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 4.19e-01 76.9% 100.0%
1wzlA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 40.0 3.75e-01 81.5% 83.1%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.54 40.0 3.80e-01 81.5% 85.0%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.53 37.0 3.60e-01 76.9% 68.8%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 39.0 3.08e-01 78.5% 38.9%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.52 37.0 3.59e-01 76.9% 97.3%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 41.0 3.77e-01 90.8% 80.7%
3kcpA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.51 37.0 3.34e-01 81.5% 61.6%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.50 38.0 3.19e-01 95.4% 45.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3303056 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.60 42.0 4.13e-01 72.3% 88.6%
5034643 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.59 42.0 3.82e-01 73.8% 97.8%
5051090 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 45.0 4.29e-01 86.2% 86.3%
3975132 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 45.0 4.13e-01 86.2% 73.3%
3949260 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.57 36.0 3.10e-01 90.8% 38.2%
4104961 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.57 42.0 3.87e-01 81.5% 94.4%
3708283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 3.85e-01 80.0% 91.8%
4943827 375.1.2.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin 0.56 35.0 4.14e-01 80.0% 100.0%
5024805 4.2.1.3 ↗ beta barrels › SH3 › SAND › SAND › RAMA 0.56 40.0 3.80e-01 78.5% 81.2%
3386080 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.54 41.0 3.61e-01 83.1% 92.0%
1758803 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.53 40.0 4.05e-01 83.1% 89.1%
3282690 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.52 38.0 3.19e-01 80.0% 42.5%
3734505 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.52 40.0 3.19e-01 84.6% 45.9%
4647627 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.51 34.0 2.47e-01 70.8% 86.0%
5062623 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 41.0 3.11e-01 96.9% 91.4%
4409482 3158.1.1.2 ↗ beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF2777 0.50 37.0 3.56e-01 80.0% 89.3%
3742843 10.28.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 0.50 38.0 3.10e-01 86.2% 99.3%
3842649 11.1.1.584 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CATSPERE_NTD2 0.50 38.0 3.18e-01 83.1% 74.2%
3693401 10.28.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 0.50 38.0 3.05e-01 84.6% 99.3%