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NC_055728.1__YP_010092160.1__KNT72_gp009__00009

Bact-Vir

NC_055728.1__YP_010092160.1__KNT72_gp009__00009

Identity

Accession:
NC_055728 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Winklervirus› Serratia_phage_X20

TaxID: 2006942

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-101
PDB
Domain cluster: rep: MW239124.1__QQG32192.1__CkP1_0225__00225__D6-80
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mo9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 45.0 4.03e-01 81.2% 50.4%
2qr4A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.58 28.0 3.95e-01 93.8% 97.9%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 33.0 3.82e-01 85.4% 84.6%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.54 39.0 4.02e-01 83.3% 78.5%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.09e-01 72.9% 69.3%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 36.0 3.33e-01 70.8% 89.8%
6ieoA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 38.0 3.84e-01 78.1% 76.6%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.52e-01 79.2% 87.9%
7w6yA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 37.0 4.03e-01 77.1% 97.5%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 36.0 2.90e-01 72.9% 92.6%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.31e-01 79.2% 79.7%
6p25A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 41.0 3.10e-01 88.5% 80.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3770801 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.63 47.0 4.81e-01 89.6% 78.9%
3842362 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.63 47.0 4.75e-01 89.6% 78.9%
3759402 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 40.0 4.65e-01 89.6% 95.4%
9277 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.59 46.0 4.30e-01 84.4% 100.0%
4029154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 3.82e-01 93.8% 58.8%
4676087 2003.1.2.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.58 45.0 4.17e-01 84.4% 95.2%
3670182 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.57 37.0 3.47e-01 78.1% 50.4%
3829832 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.57 41.0 3.99e-01 76.0% 90.0%
3934175 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.56 41.0 3.90e-01 78.1% 79.2%
4055019 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.56 44.0 3.65e-01 86.5% 68.3%
3496645 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 41.0 2.53e-01 78.1% 41.8%
4306185 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 45.0 3.89e-01 90.6% 96.8%
3796346 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 42.0 3.74e-01 86.5% 86.2%
5041097 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.52 28.0 3.58e-01 72.9% 92.7%
5035197 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.51 37.0 3.22e-01 79.2% 94.5%
4980697 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 34.0 3.35e-01 70.8% 92.7%